[adegenet-forum] read.plink: no position read from .map file

[Danica Fabrigar]

Hi,
I am trying to load genome information using the read.PLINK feature. The data uploads fine with no error messages, however when I examine the @other slot, I see that the SNP positions from the map file are not uploaded. I've checked that my .map file contains all the necessary columns and all the information is there.
>chr2L<-read.PLINK ("2L.raw",
map.file="2L_hwe_cleaned.map", chunkSize=10000, parallel=FALSE)
>chr2L$other$positionNULL


Any ideas?

Thanks,Danica
 		 	   		  
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