[adegenet-forum] loading package problems

[Sébastien Puechmaille]

Hello Thibaut,

Yes, typing 'install.packages("adegenet", dep=TRUE)' installs the package
fine and I've tried a few fucntions and so far, that works.
I tried to look what is the 'meaning' of the 'dep=TRUE' but it's not
detailed in the description of the function 'install.packages'. I guess it
has to do with downloading dependencies right?

Thanks,

 Sebastien.


On 8 November 2010 17:38, Jombart, Thibaut <t.jombart at imperial.ac.uk> wrote:

> Hello,
>
> This likely indicates the installation has gone wrong.
> When you type:
> install.packages("adegenet", dep=TRUE)
>
> do you get any warning or error message?
>
> Best
>
> Thibaut
>
>
> ________________________________________
> From: adegenet-forum-bounces at lists.r-forge.r-project.org [
> adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of
> gihifi at aol.com [gihifi at aol.com]
> Sent: 08 November 2010 12:41
> To: adegenet-forum at lists.r-forge.r-project.org
> Subject: [adegenet-forum] loading package problems
>
> Hello,
>
> I just heard about the package adegenet and want to try it out, but i get
> an error message when loading the package. I tried it both on Windows 7 and
> XP, and get the same error message. I am using R 2.12.0
>
> **********************************
>
> R version 2.12.0 (2010-10-15)
> Copyright (C) 2010 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: i386-pc-mingw32/i386 (32-bit)
>
>
>
> ***************************************
>
> > local({pkg <- select.list(sort(.packages(all.available =
> TRUE)),graphics=TRUE)
> + if(nchar(pkg)) library(pkg, character.only=TRUE)})
> Loading required package: MASS
>   ==========================
>    adegenet 1.2-8 is loaded
>   ==========================
>
>  - to start, type '?adegenet'
>  - to browse adegenet website, type 'adegenetWeb()'
>  - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org
>
>
> Error in as.environment(pos) :
>  no item called "newtable" on the search list
> In addition: Warning message:
> In objects(newtable, all.names = TRUE) :
>  ‘newtable’ converted to character string
> Error in as.environment(pos) :
>  no item called "newtable" on the search list
> In addition: Warning message:
> In objects(newtable, all.names = TRUE) :
>  ‘newtable’ converted to character string
> >
>
> *************************************************
> Anyway, i tried if it works using the command read.fstat and it gives an
> error message so I guess something went wrong during the installation or
> loading of the package
>
> ***************
> Error: could not find function "readfstat"
> ***************
>
>
> It would be great if you help me out,
> Thanks in advance
> Gisela
> _______________________________________________
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> adegenet-forum at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
>
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