[adegenet-forum] loading package problems

Jombart, Thibaut t.jombart at imperial.ac.uk
Mon Nov 8 18:38:24 CET 2010


Hello, 

This likely indicates the installation has gone wrong.
When you type:
install.packages("adegenet", dep=TRUE)

do you get any warning or error message?

Best

Thibaut


________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of gihifi at aol.com [gihifi at aol.com]
Sent: 08 November 2010 12:41
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] loading package problems

Hello,

I just heard about the package adegenet and want to try it out, but i get an error message when loading the package. I tried it both on Windows 7 and XP, and get the same error message. I am using R 2.12.0

**********************************

R version 2.12.0 (2010-10-15)
Copyright (C) 2010 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i386-pc-mingw32/i386 (32-bit)



***************************************

> local({pkg <- select.list(sort(.packages(all.available = TRUE)),graphics=TRUE)
+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
Loading required package: MASS
   ==========================
    adegenet 1.2-8 is loaded
   ==========================

 - to start, type '?adegenet'
 - to browse adegenet website, type 'adegenetWeb()'
 - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org


Error in as.environment(pos) :
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
Error in as.environment(pos) :
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
>

*************************************************
Anyway, i tried if it works using the command read.fstat and it gives an error message so I guess something went wrong during the installation or loading of the package

***************
Error: could not find function "readfstat"
***************


It would be great if you help me out,
Thanks in advance
Gisela


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