Hello Thibaut,<br><br>Yes, typing 'install.packages("adegenet", dep=TRUE)' installs the package fine and I've tried a few fucntions and so far, that works. <br>I tried to look what is the 'meaning' of the 'dep=TRUE' but it's not detailed in the description of the function 'install.packages'. I guess it has to do with downloading dependencies right?<br>
<br>Thanks,<br><br> Sebastien.<br>
<br><br><div class="gmail_quote">On 8 November 2010 17:38, Jombart, Thibaut <span dir="ltr"><<a href="mailto:t.jombart@imperial.ac.uk">t.jombart@imperial.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hello,<br>
<br>
This likely indicates the installation has gone wrong.<br>
When you type:<br>
install.packages("adegenet", dep=TRUE)<br>
<br>
do you get any warning or error message?<br>
<br>
Best<br>
<br>
Thibaut<br>
<br>
<br>
________________________________________<br>
From: <a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org">adegenet-forum-bounces@lists.r-forge.r-project.org</a> [<a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org">adegenet-forum-bounces@lists.r-forge.r-project.org</a>] On Behalf Of <a href="mailto:gihifi@aol.com">gihifi@aol.com</a> [<a href="mailto:gihifi@aol.com">gihifi@aol.com</a>]<br>
Sent: 08 November 2010 12:41<br>
To: <a href="mailto:adegenet-forum@lists.r-forge.r-project.org">adegenet-forum@lists.r-forge.r-project.org</a><br>
Subject: [adegenet-forum] loading package problems<br>
<br>
Hello,<br>
<br>
I just heard about the package adegenet and want to try it out, but i get an error message when loading the package. I tried it both on Windows 7 and XP, and get the same error message. I am using R 2.12.0<br>
<br>
**********************************<br>
<br>
R version 2.12.0 (2010-10-15)<br>
Copyright (C) 2010 The R Foundation for Statistical Computing<br>
ISBN 3-900051-07-0<br>
Platform: i386-pc-mingw32/i386 (32-bit)<br>
<br>
<br>
<br>
***************************************<br>
<br>
> local({pkg <- select.list(sort(.packages(all.available = TRUE)),graphics=TRUE)<br>
+ if(nchar(pkg)) library(pkg, character.only=TRUE)})<br>
Loading required package: MASS<br>
==========================<br>
adegenet 1.2-8 is loaded<br>
==========================<br>
<br>
- to start, type '?adegenet'<br>
- to browse adegenet website, type 'adegenetWeb()'<br>
- to post questions/comments: <a href="mailto:adegenet-forum@lists.r-forge.r-project.org">adegenet-forum@lists.r-forge.r-project.org</a><br>
<br>
<br>
Error in as.environment(pos) :<br>
no item called "newtable" on the search list<br>
In addition: Warning message:<br>
In objects(newtable, all.names = TRUE) :<br>
‘newtable’ converted to character string<br>
Error in as.environment(pos) :<br>
no item called "newtable" on the search list<br>
In addition: Warning message:<br>
In objects(newtable, all.names = TRUE) :<br>
‘newtable’ converted to character string<br>
><br>
<br>
*************************************************<br>
Anyway, i tried if it works using the command read.fstat and it gives an error message so I guess something went wrong during the installation or loading of the package<br>
<br>
***************<br>
Error: could not find function "readfstat"<br>
***************<br>
<br>
<br>
It would be great if you help me out,<br>
Thanks in advance<br>
Gisela<br>
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</blockquote></div><br>