[adegenet-forum] loading package problems

[Jombart, Thibaut]

Yep, that's it (dep=TRUE installs all dependencies). 

I could just reproduce the problem on another PC with Vista. Solved by
1) starting R as administrator (right click -> launch as admin)
2) installing the package using
install.packages("adegenet", dep=TRUE)

Then, the package works just fine.

Best regards

Thibaut


________________________________________
From: Sébastien Puechmaille [s.puechmaille at gmail.com]
Sent: 08 November 2010 17:57
To: Jombart, Thibaut
Cc: gihifi at aol.com; adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] loading package problems

Hello Thibaut,

Yes, typing 'install.packages("adegenet", dep=TRUE)' installs the package fine and I've tried a few fucntions and so far, that works.
I tried to look what is the 'meaning' of the 'dep=TRUE' but it's not detailed in the description of the function 'install.packages'. I guess it has to do with downloading dependencies right?

Thanks,

 Sebastien.


On 8 November 2010 17:38, Jombart, Thibaut <t.jombart at imperial.ac.uk<mailto:t.jombart at imperial.ac.uk>> wrote:
Hello,

This likely indicates the installation has gone wrong.
When you type:
install.packages("adegenet", dep=TRUE)

do you get any warning or error message?

Best

Thibaut


________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org<mailto:adegenet-forum-bounces at lists.r-forge.r-project.org> [adegenet-forum-bounces at lists.r-forge.r-project.org<mailto:adegenet-forum-bounces at lists.r-forge.r-project.org>] On Behalf Of gihifi at aol.com<mailto:gihifi at aol.com> [gihifi at aol.com<mailto:gihifi at aol.com>]
Sent: 08 November 2010 12:41
To: adegenet-forum at lists.r-forge.r-project.org<mailto:adegenet-forum at lists.r-forge.r-project.org>
Subject: [adegenet-forum] loading package problems

Hello,

I just heard about the package adegenet and want to try it out, but i get an error message when loading the package. I tried it both on Windows 7 and XP, and get the same error message. I am using R 2.12.0

**********************************

R version 2.12.0 (2010-10-15)
Copyright (C) 2010 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i386-pc-mingw32/i386 (32-bit)



***************************************

> local({pkg <- select.list(sort(.packages(all.available = TRUE)),graphics=TRUE)
+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
Loading required package: MASS
  ==========================
   adegenet 1.2-8 is loaded
  ==========================

 - to start, type '?adegenet'
 - to browse adegenet website, type 'adegenetWeb()'
 - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org<mailto:adegenet-forum at lists.r-forge.r-project.org>


Error in as.environment(pos) :
 no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
 ‘newtable’ converted to character string
Error in as.environment(pos) :
 no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
 ‘newtable’ converted to character string
>

*************************************************
Anyway, i tried if it works using the command read.fstat and it gives an error message so I guess something went wrong during the installation or loading of the package

***************
Error: could not find function "readfstat"
***************


It would be great if you help me out,
Thanks in advance
Gisela
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