[Seqinr-forum] about read.alignment and read.fasta

[Simon Penel]

Hi,
As Jean said, I think the problem is related to the version of R ( and 
the fact that the NAMESPACE file is still missing in seqinr , it is 
something we should change).
Anyway, a temporary solution to use seqinr is to type :

library.dynam("seqinr")


juste after  you typed library(seqinr)


Simon



  Le 14/03/12 16:15, THIOULOUSE JEAN a écrit :
> Did you update to the latest version of R (2.14.2) before upgrading to seqinr 3.06 ?
>
> Jean
>
>
> Le 14 mars 2012 à 13:24, Abhijeet Shah a écrit :
>
>> Hi seqinR users,
>>
>> I had a slight problem with the commands read.alignment() and read.fasta()
>> with the latest version of seqinR (version 3.06).
>>
>> whenever I use the command read.alignment
>>
>>> read.alignment(file="generated_sequences.ma", format="fasta")
>> Error in .Call("read_fasta_align", file, PACKAGE = "seqinr") :
>>   C symbol name "read_fasta_align" not in DLL for package "seqinr"
>>
>>
>> Similarly, I get the following error with read.fasta
>>
>>> read.fasta(file="generated_sequences.ma")
>> Error in .Call("s2c", string, PACKAGE = "seqinr") :
>>   C symbol name "s2c" not in DLL for package "seqinr"
>>
>>
>> Does anyone else have the same problems with version 3.06?
>> I reverted to version 3.05, and the errors disappeared!
>>
>> Please Advise.
>>
>> Thank You
>>
>>
>>
>>
>> Best Wishes
>> Abhijeet Shah
>>
>>
>>
>>
>>
>>
>>
>> Abhijeet Shah
>> Munich Graduate School for Evolution, Ecology and Systematics
>> Ludwig-Maximilians-Universität München
>> email : Abhijeet.Shah at campus.lmu.de,
>> email: abhijeet.shah at gmail.com
>>
>>
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-- 
Simon Penel
Laboratoire de Biometrie et Biologie Evolutive
Bat 711 - CNRS UMR 5558 - Universite Lyon 1
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