[Seqinr-forum] about read.alignment and read.fasta

[THIOULOUSE JEAN]

A simple update of R to v. 2.14.2 solved the problem for me.
But the NAMESPACE should be added very soon indeed.

Jean

Le 14 mars 2012 à 16:21, Simon Penel a écrit :

> Hi,
> As Jean said, I think the problem is related to the version of R ( and 
> the fact that the NAMESPACE file is still missing in seqinr , it is 
> something we should change).
> Anyway, a temporary solution to use seqinr is to type :
> 
> library.dynam("seqinr")
> 
> 
> juste after  you typed library(seqinr)
> 
> 
> Simon
> 
> 
> 
>  Le 14/03/12 16:15, THIOULOUSE JEAN a écrit :
>> Did you update to the latest version of R (2.14.2) before upgrading to seqinr 3.06 ?
>> 
>> Jean
>> 
>> 
>> Le 14 mars 2012 à 13:24, Abhijeet Shah a écrit :
>> 
>>> Hi seqinR users,
>>> 
>>> I had a slight problem with the commands read.alignment() and read.fasta()
>>> with the latest version of seqinR (version 3.06).
>>> 
>>> whenever I use the command read.alignment
>>> 
>>>> read.alignment(file="generated_sequences.ma", format="fasta")
>>> Error in .Call("read_fasta_align", file, PACKAGE = "seqinr") :
>>>  C symbol name "read_fasta_align" not in DLL for package "seqinr"
>>> 
>>> 
>>> Similarly, I get the following error with read.fasta
>>> 
>>>> read.fasta(file="generated_sequences.ma")
>>> Error in .Call("s2c", string, PACKAGE = "seqinr") :
>>>  C symbol name "s2c" not in DLL for package "seqinr"
>>> 
>>> 
>>> Does anyone else have the same problems with version 3.06?
>>> I reverted to version 3.05, and the errors disappeared!
>>> 
>>> Please Advise.
>>> 
>>> Thank You
>>> 
>>> 
>>> 
>>> 
>>> Best Wishes
>>> Abhijeet Shah
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> Abhijeet Shah
>>> Munich Graduate School for Evolution, Ecology and Systematics
>>> Ludwig-Maximilians-Universität München
>>> email : Abhijeet.Shah at campus.lmu.de,
>>> email: abhijeet.shah at gmail.com
>>> 
>>> 
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> 
> 
> -- 
> Simon Penel
> Laboratoire de Biometrie et Biologie Evolutive
> Bat 711 - CNRS UMR 5558 - Universite Lyon 1
> 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex
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> 
> ATTENTION NOUVELLE ADRESSE:
> simon.penel at univ-lyon1.fr
> 
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