[Seqinr-forum] seqinr-forum-getOrganisms

David Lejon dph.lejon at gmail.com
Wed Jun 24 20:14:36 CEST 2009


Dear all,

By using seqinr, I would like to create a fasta file from a list of 
accession number.
So far, I do not have any problem to create the list, get the name (getName)
and the sequence (getSequence). I was just wondering if it would be 
possible via seqinr
to get the organisms/taxonomy attibutes (on genbank database) in order 
to have a fasta
file as below :

 >Accesion_number_organisms_taxonomy
TGCAGCGCCGTCGGGTAAGACCAACTCCCATGGT

Thanks in advance

cheers
David
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