[Rcpp-devel] Error compiling Rcpp 0.10.4
Jonathan Olmsted
jolmsted at princeton.edu
Thu Sep 12 23:44:21 CEST 2013
Simon, I'm curious how you produced that log. It's not the output from
installing the port with the debug flag (i.e., -d), right? I'm curious to
take a look at mine for something specific.
-Jonathan
-------------------------------------------------------------------------
J.P. Olmsted
029 Corwin (Office)
130 Corwin Hall (Mail)
Politics Department
Princeton University
Princeton, NJ 08544
t: 609.258.6202
f: 609.258.1110
jolmsted at princeton.edu
http://about.me/olmjo
-------------------------------------------------------------------------
On Thu, Sep 12, 2013 at 2:18 PM, Simon Zehnder <szehnder at uni-bonn.de> wrote:
> Romain, Jonathan,
>
> an update on the error I reported: This was due to some gettext failure in
> the configuration of the R build on the Mac. I had to use the configure
> options --with-included-gettext and everything worked after installation.
> For a config.log if interested see here:
> https://gist.github.com/anonymous/6541684.
>
> Thanks again for your quick help!
>
>
> Best
>
> Simon
>
> On Sep 12, 2013, at 5:54 PM, Simon Zehnder <szehnder at uni-bonn.de> wrote:
>
> > Romain, Jonathan,
> >
> > many thanks for the quick response. This is actually very good to know,
> that the -lintl is not in there usually. What I will do is to recompile my
> R from sources - but this time without the option
> --with-valgrind-instrumentation. Hopefully this is the source of error.
> >
> > Coming back to this later with hopefully some positive results.
> >
> > Best
> >
> > Simon
> >
> > On Sep 12, 2013, at 5:47 PM, Jonathan Olmsted <jolmsted at princeton.edu>
> wrote:
> >
> >> Any idea where that is coming from? It isn't coming from the Rcpp
> Makevars or from a default Macports installation (as best as I can tell). I
> just did an clean install of R from a clean Macports and then installed
> Rcpp from within R.
> >>
> >> g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/lib
> -Wl,-headerpad_max_install_names -arch x86_64 -o Rcpp.so Date.o Module.o
> Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o
> -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> >> g++ -o libRcpp.dylib Date.o Module.o Rcpp_init.o Timer.o api.o
> attributes.o barrier.o exceptions.o -dynamiclib
> -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
> -multiply_defined suppress -F/opt/local/Library/Frameworks/R.framework/..
> -framework R -Wl,-framework -Wl,CoreFoundation
> >> ar qc libRcpp.a Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o
> barrier.o exceptions.o
> >>
> >>
> >>
> >>
> >>
> -------------------------------------------------------------------------
> >> J.P. Olmsted
> >>
> >> 029 Corwin (Office)
> >> 130 Corwin Hall (Mail)
> >>
> >> Politics Department
> >> Princeton University
> >> Princeton, NJ 08544
> >>
> >>
> >> t: 609.258.6202
> >> f: 609.258.1110
> >> jolmsted at princeton.edu
> >> http://about.me/olmjo
> >>
> -------------------------------------------------------------------------
> >>
> >>
> >> On Thu, Sep 12, 2013 at 10:28 AM, Simon Zehnder <szehnder at uni-bonn.de>
> wrote:
> >> Dear Rcpp-Users and Rcpp-Devels,
> >>
> >> I had to reinstall my system lately and compiled R-3.0.1. I installed
> several packages and all installations went well. Then I tried to install
> Rcpp 0.10.4. and I got:
> >>
> >> R CMD INSTALL Rcpp
> >> * installing to library ‘/Users/simonzehnder/Library/R/3.0/library’
> >> * installing *source* package ‘Rcpp’ ...
> >> ** package ‘Rcpp’ successfully unpacked and MD5 sums checked
> >> ** libs
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c Date.cpp -o
> Date.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c Module.cpp -o
> Module.o
> >> gcc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
> -DNDEBUG -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c
> Rcpp_init.c -o Rcpp_init.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c Timer.cpp -o
> Timer.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c api.cpp -o
> api.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c attributes.cpp
> -o attributes.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c barrier.cpp -o
> barrier.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/opt/local/include -fPIC -g -O2 -c exceptions.cpp
> -o exceptions.o
> >> g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/lib
> -o Rcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o
> exceptions.o -F/Library/Frameworks/R.framework/.. -framework R -lintl
> -Wl,-framework -Wl,CoreFoundation
> >> g++ -o libRcpp.dylib Date.o Module.o Rcpp_init.o Timer.o api.o
> attributes.o barrier.o exceptions.o -dynamiclib
> -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
> -multiply_defined suppress -F/Library/Frameworks/R.framework/..
> -framework R -lintl -Wl,-framework -Wl,CoreFoundation
> >> ld: library not found for -lintl
> >> collect2: error: ld returned 1 exit status
> >> make: *** [libRcpp] Error 1
> >> ERROR: compilation failed for package ‘Rcpp’
> >> * removing ‘/Users/simonzehnder/Library/R/3.0/library/Rcpp’
> >>
> >> What is the intl library and what could be the error.
> >>
> >> My System: Mac OS X Mountain Lion 10.8.4, Macports gcc48 Compiler
> >>
> >>
> >> Best
> >>
> >> Simon
> >> _______________________________________________
> >> Rcpp-devel mailing list
> >> Rcpp-devel at lists.r-forge.r-project.org
> >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
> >>
> >
> > _______________________________________________
> > Rcpp-devel mailing list
> > Rcpp-devel at lists.r-forge.r-project.org
> > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
>
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