[Rcpp-devel] Error compiling Rcpp 0.10.4

[Simon Zehnder]

Jonathan,

I discussed this on R-SIG-Mac and I gave there also the whole sequence of installations and configurations I did. As this topic is not anymore Rcpp relevant I would like to refer you to the discussion on R-SIG-Mac: https://stat.ethz.ch/pipermail/r-sig-mac/2013-September/010264.html

Thanks again for your support!

Best

Simon

On Sep 12, 2013, at 11:44 PM, Jonathan Olmsted <jolmsted at princeton.edu> wrote:

> Simon, I'm curious how you produced that log. It's not the output from installing the port with the debug flag (i.e., -d), right? I'm curious to take a look at mine for something specific.
> 
> -Jonathan
> 
> 
> 
> -------------------------------------------------------------------------
> J.P. Olmsted
> 
> 029 Corwin (Office)
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> Politics Department
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> t: 609.258.6202
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> 
> 
> On Thu, Sep 12, 2013 at 2:18 PM, Simon Zehnder <szehnder at uni-bonn.de> wrote:
> Romain, Jonathan,
> 
> an update on the error I reported: This was due to some gettext failure in the configuration of the R build on the Mac. I had to use the configure options --with-included-gettext and everything worked after installation. For a config.log if interested see here: https://gist.github.com/anonymous/6541684.
> 
> Thanks again for your quick help!
> 
> 
> Best
> 
> Simon
> 
> On Sep 12, 2013, at 5:54 PM, Simon Zehnder <szehnder at uni-bonn.de> wrote:
> 
> > Romain, Jonathan,
> >
> > many thanks for the quick response. This is actually very good to know, that the -lintl is not in there usually. What I will do is to recompile my R from sources - but this time without the option --with-valgrind-instrumentation. Hopefully this is the source of error.
> >
> > Coming back to this later with hopefully some positive results.
> >
> > Best
> >
> > Simon
> >
> > On Sep 12, 2013, at 5:47 PM, Jonathan Olmsted <jolmsted at princeton.edu> wrote:
> >
> >> Any idea where that is coming from? It isn't coming from the Rcpp Makevars or from a default Macports installation (as best as I can tell). I just did an clean install of R from a clean Macports and then installed Rcpp from within R.
> >>
> >> g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 -o Rcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
> >> g++ -o libRcpp.dylib Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress   -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
> >> ar qc libRcpp.a Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o
> >>
> >>
> >>
> >>
> >> -------------------------------------------------------------------------
> >> J.P. Olmsted
> >>
> >> 029 Corwin (Office)
> >> 130 Corwin Hall (Mail)
> >>
> >> Politics Department
> >> Princeton University
> >> Princeton, NJ 08544
> >>
> >>
> >> t: 609.258.6202
> >> f: 609.258.1110
> >> jolmsted at princeton.edu
> >> http://about.me/olmjo
> >> -------------------------------------------------------------------------
> >>
> >>
> >> On Thu, Sep 12, 2013 at 10:28 AM, Simon Zehnder <szehnder at uni-bonn.de> wrote:
> >> Dear Rcpp-Users and Rcpp-Devels,
> >>
> >> I had to reinstall my system lately and compiled R-3.0.1. I installed several packages and all installations went well. Then I tried to install Rcpp 0.10.4. and I got:
> >>
> >> R CMD INSTALL Rcpp
> >> * installing to library ‘/Users/simonzehnder/Library/R/3.0/library’
> >> * installing *source* package ‘Rcpp’ ...
> >> ** package ‘Rcpp’ successfully unpacked and MD5 sums checked
> >> ** libs
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c Date.cpp -o Date.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c Module.cpp -o Module.o
> >> gcc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c Rcpp_init.c -o Rcpp_init.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c Timer.cpp -o Timer.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c api.cpp -o api.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c attributes.cpp -o attributes.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c barrier.cpp -o barrier.o
> >> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include/ -I/opt/local/include    -fPIC  -g -O2  -c exceptions.cpp -o exceptions.o
> >> g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/lib -o Rcpp.so Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -F/Library/Frameworks/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
> >> g++ -o libRcpp.dylib Date.o Module.o Rcpp_init.o Timer.o api.o attributes.o barrier.o exceptions.o -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress   -F/Library/Frameworks/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
> >> ld: library not found for -lintl
> >> collect2: error: ld returned 1 exit status
> >> make: *** [libRcpp] Error 1
> >> ERROR: compilation failed for package ‘Rcpp’
> >> * removing ‘/Users/simonzehnder/Library/R/3.0/library/Rcpp’
> >>
> >> What is the intl library and what could be the error.
> >>
> >> My System: Mac OS X Mountain Lion 10.8.4, Macports gcc48 Compiler
> >>
> >>
> >> Best
> >>
> >> Simon
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