[Rcpp-devel] Problem compling rinside_sample0 on OSX

Dan Kulp dwkulp at mail.med.upenn.edu
Tue Apr 6 17:47:16 CEST 2010 

Success!   The snag was installing both packages from their source packages,
not the binary OSX ones.

I appreciate your guys time, too bad installation from CRAN didn't "just
work".  For me there is a lot of potential for this library.  I use R for
all my data analysis, but I have a set of c++ libraries used for generating
the data (my application is protein design), it would be great to fuse the
two.

One question, does RInside allow you to load installed packages (
library("RSvgDevice") ) ?

Thanks again,
Dan


On Tue, Apr 6, 2010 at 9:36 AM, Dirk Eddelbuettel <edd at debian.org> wrote:

>
> On 6 April 2010 at 09:22, Dan Kulp wrote:
> | Sorry about that, I thought you had figured out the CRAN version
> numbers....
> |
> | Rcpp : 0.7.11
> | RInside: 0.2.2
> |
> | I also tried installing the package as you recommend .. doesn't help,
> | clearly because I already have 0.7.11
> |
> | Any more suggestions?
>
> Not at this point given the somewhat incomplete information you provided.
>
> See below for a log from my Linux box.
>
> Dirk
>
> edd at ron:~/svn/rcpp> R CMD INSTALL pkg/Rcpp_0.7.11.tar.gz
> * installing to library ‘/usr/local/lib/R/site-library’
> * installing *source* package ‘Rcpp’ ...
> ** libs
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Dimension.cpp
> -o Dimension.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> DottedPair.cpp -o DottedPair.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> Environment.cpp -o Environment.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Evaluator.cpp
> -o Evaluator.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Function.cpp
> -o Function.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Language.cpp
> -o Language.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Pairlist.cpp
> -o Pairlist.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Promise.cpp
> -o Promise.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c RObject.cpp
> -o RObject.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppCommon.cpp -o RcppCommon.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c RcppDate.cpp
> -o RcppDate.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppDateVector.cpp -o RcppDateVector.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppDatetime.cpp -o RcppDatetime.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppDatetimeVector.cpp -o RcppDatetimeVector.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c RcppFrame.cpp
> -o RcppFrame.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppFunction.cpp -o RcppFunction.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c RcppList.cpp
> -o RcppList.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppMatrix.cpp -o RcppMatrix.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppMatrixView.cpp -o RcppMatrixView.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppNumList.cpp -o RcppNumList.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppParams.cpp -o RcppParams.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppResultSet.cpp -o RcppResultSet.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppStringVector.cpp -o RcppStringVector.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppStringVectorView.cpp -o RcppStringVectorView.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppVector.cpp -o RcppVector.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> RcppVectorView.cpp -o RcppVectorView.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c S4.cpp -o
> S4.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c Symbol.cpp -o
> Symbol.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> WeakReference.cpp -o WeakReference.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c clone.cpp -o
> clone.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c coerce.cpp -o
> coerce.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c debugging.cpp
> -o debugging.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c
> exceptions.cpp -o exceptions.o
> g++ -I/usr/share/R/include -I.     -fpic  -O3 -Wall -pipe  -c r_cast.cpp -o
> r_cast.o
> g++ -shared -o Rcpp.so Dimension.o DottedPair.o Environment.o Evaluator.o
> Function.o Language.o Pairlist.o Promise.o RObject.o RcppCommon.o RcppDate.o
> RcppDateVector.o RcppDatetime.o RcppDatetimeVector.o RcppFrame.o
> RcppFunction.o RcppList.o RcppMatrix.o RcppMatrixView.o RcppNumList.o
> RcppParams.o RcppResultSet.o RcppStringVector.o RcppStringVectorView.o
> RcppVector.o RcppVectorView.o S4.o Symbol.o WeakReference.o clone.o coerce.o
> debugging.o exceptions.o r_cast.o -L/usr/lib/R/lib -lR
> g++ -o libRcpp.so Dimension.o DottedPair.o Environment.o Evaluator.o
> Function.o Language.o Pairlist.o Promise.o RObject.o RcppCommon.o RcppDate.o
> RcppDateVector.o RcppDatetime.o RcppDatetimeVector.o RcppFrame.o
> RcppFunction.o RcppList.o RcppMatrix.o RcppMatrixView.o RcppNumList.o
> RcppParams.o RcppResultSet.o RcppStringVector.o RcppStringVectorView.o
> RcppVector.o RcppVectorView.o S4.o Symbol.o WeakReference.o clone.o coerce.o
> debugging.o exceptions.o r_cast.o -shared   -L/usr/lib/R/lib -lR
> ar qc libRcpp.a Dimension.o DottedPair.o Environment.o Evaluator.o
> Function.o Language.o Pairlist.o Promise.o RObject.o RcppCommon.o RcppDate.o
> RcppDateVector.o RcppDatetime.o RcppDatetimeVector.o RcppFrame.o
> RcppFunction.o RcppList.o RcppMatrix.o RcppMatrixView.o RcppNumList.o
> RcppParams.o RcppResultSet.o RcppStringVector.o RcppStringVectorView.o
> RcppVector.o RcppVectorView.o S4.o Symbol.o WeakReference.o clone.o coerce.o
> debugging.o exceptions.o r_cast.o
> cp libRcpp.so ../inst/lib
> cp Rcpp*.h ../inst/lib
> cp Rcpp/*.h ../inst/lib/Rcpp
> cp Rcpp/internal/*.h ../inst/lib/Rcpp/internal
> cp Rcpp/traits/*.h ../inst/lib/Rcpp/traits
> cp libRcpp.a ../inst/lib
> rm libRcpp.so libRcpp.a
> installing to /usr/local/lib/R/site-library/Rcpp/libs
> ** R
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
>
> * DONE (Rcpp)
> edd at ron:~/svn/rcpp> R CMD INSTALL ../rinside/RInside_0.2.2.tar.gz
> * installing to library ‘/usr/local/lib/R/site-library’
> * installing *source* package ‘RInside’ ...
> ** libs
> ** arch -
> /usr/lib/R/bin/R --vanilla --slave < tools/RInsideEnvVars.r >
> RInsideEnvVars.h
> /usr/lib/R/bin/R --vanilla --slave < tools/RInsideAutoloads.r >
> RInsideAutoloads.h
> g++ -I/usr/share/R/include  -Wall -I/usr/share/R/include
> -I/usr/local/lib/R/site-library/Rcpp/lib     -fpic  -O3 -Wall -pipe  -c
> MemBuf.cpp -o MemBuf.o
> g++ -I/usr/share/R/include  -Wall -I/usr/share/R/include
> -I/usr/local/lib/R/site-library/Rcpp/lib     -fpic  -O3 -Wall -pipe  -c
> RInside.cpp -o RInside.o
> g++ -o libRInside.so  MemBuf.o RInside.o -shared   -L/usr/lib/R/lib -lR
> ar qc libRInside.a MemBuf.o RInside.o
> cp libRInside.so  ../inst/lib
> cp RInside.h MemBuf.h ../inst/lib
> cp libRInside.a ../inst/lib
> rm libRInside.so  libRInside.a
> ** R
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
>
> * DONE (RInside)
> edd at ron:~/svn/rcpp> cd ../rinside/pkg/inst/examples/standard/
> edd at ron:~/svn/rinside/pkg/inst/examples/standard> rm rinside_sample0; make
> rinside_sample0
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/lib
> -I/usr/local/lib/R/site-library/RInside/lib -g -O2 -Wall
>  rinside_sample0.cpp  -L/usr/lib/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample0
> edd at ron:~/svn/rinside/pkg/inst/examples/standard> ./rinside_sample0
> Hello, world!
> edd at ron:~/svn/rinside/pkg/inst/examples/standard>
>
> --
>   Registration is open for the 2nd International conference R / Finance
> 2010
>  See http://www.RinFinance.com for details, and see you in Chicago in
> April!
>



-- 
Dan Kulp, PhD
Postdoctoral Fellow
Biosciences Division, B-9
Los Alamos National Laboratory
Los Alamos,NM 87545
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