[Biomod-commits] Warning in BIOMOD_FormatingData

Pablo Riul pabloriul at yahoo.com.br
Wed Sep 12 17:59:36 CEST 2012

Dear Damien,

Ok, thanks! Just another thing... I'm not sure if you received my anterior message.  I tried to get the var importances of a consensus model using something like getModelsVarImport() to an object created by the BIOMOD_EnsembleModeling() function but it was not possible. Is there any way to get these information? Also, will be possible to get the response plots for this same object?

Pablo Riul

Departamento de Engenharia e Meio Ambiente
Centro de Ciências Aplicadas e Educação
Universidade Federal da Paraíba - Campus IV
R: Mangueira s/n, Centro CEP: 58.297-000
Rio Tinto - Paraíba - Brasil

 De: Damien Georges <damien.georges2 at gmail.com>
Para: biomod-commits at lists.r-forge.r-project.org; Pablo Riul <pabloriul at yahoo.com.br> 
Enviadas: Quarta-feira, 12 de Setembro de 2012 10:52
Assunto: Re: [Biomod-commits] Warning in BIOMOD_FormatingData

Dear Pablo,

Don't worry about it.. It's just a warning indicating that some
      function of raster package have changed of names.. 
I took this into account in the last biomod2 version so warnings
      will disappear when you'll update the package .



On 12/09/2012 14:46, Pablo Riul wrote:

Dear list,
>I updated my packages and I'm now using raster 2.0-12. When I created myBiomodData using the BIOMOD_FormatingData function I received the warning below:
>> myBiomodData <- BIOMOD_FormatingData(resp.var = myResp,expl.var = myExpl,resp.xy = myRespXY,resp.name = myRespName,PA.nb.rep = 1,PA.nb.absences = 1000,PA.strategy = 'random')
>-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Mhisp Data Formating -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>      ! No data has been set aside for modeling evaluation
>   > Pseudo Absences Selection checkings...
>   > random pseudo absences selection
>   > Pseudo absences are selected in explanatory variables
>-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Done -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>Warning message:
>In .local(x, rcl, ...) :
>  raster function "reclass" has been deprecated and will be removed from the package;
>Please use "reclassify" instead
>Its not a problem now, but maybe in next updates of package raster the reclass function may be not available anymore.
>Pablo Riul
>Departamento de Engenharia e Meio Ambiente
>Centro de Ciências Aplicadas e Educação
>Universidade Federal da Paraíba - Campus IV
>R: Mangueira s/n, Centro CEP: 58.297-000
>Rio Tinto - Paraíba - Brasil
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