[Biomod-commits] Warning in BIOMOD_FormatingData

[Damien Georges]

Dear Pablo,

There is no way to extract variables importance from a Ensemble model 
because it's not calculated yet.. We are thinking about the way to 
implement it  because it's a really time consuming step.. Concerning the 
response plots, the problem is the same..
I will tell you when this functionalities will be ready.

Cheers,

Damien.

On 12/09/2012 17:59, Pablo Riul wrote:
> Dear Damien,
>
> Ok, thanks! Just another thing... I'm not sure if you received my 
> anterior message.  I tried to get the var importances of a consensus 
> model using something like getModelsVarImport() to an object created 
> by the BIOMOD_EnsembleModeling() function but it was not possible. Is 
> there any way to get these information? Also, will be possible to get 
> the response plots for this same object?
>
> Cheers,
> Pablo Riul
>
> Departamento de Engenharia e Meio Ambiente
> Centro de Ciências Aplicadas e Educação
> Universidade Federal da Paraíba - Campus IV
> R: Mangueira s/n, Centro CEP: 58.297-000
> Rio Tinto - Paraíba - Brasil
>
> ------------------------------------------------------------------------
> *De:* Damien Georges <damien.georges2 at gmail.com>
> *Para:* biomod-commits at lists.r-forge.r-project.org; Pablo Riul 
> <pabloriul at yahoo.com.br>
> *Enviadas:* Quarta-feira, 12 de Setembro de 2012 10:52
> *Assunto:* Re: [Biomod-commits] Warning in BIOMOD_FormatingData
>
> Dear Pablo,
>
> Don't worry about it.. It's just a warning indicating that some 
> function of raster package have changed of names..
> I took this into account in the last biomod2 version so warnings will 
> disappear when you'll update the package .
>
> Best,
>
> Damien
>
> On 12/09/2012 14:46, Pablo Riul wrote:
>> Dear list,
>>
>> I updated my packages and I'm now using raster 2.0-12. When I created 
>> myBiomodData using the BIOMOD_FormatingData function I received the 
>> warning below:
>>
>> >myBiomodData <- BIOMOD_FormatingData(resp.var = myResp,expl.var = 
>> myExpl,resp.xy = myRespXY,resp.name = myRespName,PA.nb.rep = 
>> 1,PA.nb.absences = 1000,PA.strategy = 'random')
>>
>> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Mhisp Data 
>> Formating -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>>
>>       ! No data has been set aside for modeling evaluation
>>    > Pseudo Absences Selection checkings...
>>    > random pseudo absences selection
>>    > Pseudo absences are selected in explanatory variables
>> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= 
>> Done -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>> Warning message:
>> In .local(x, rcl, ...) :
>> raster function "reclass" has been deprecated and will be removed 
>> from the package;
>> Please use "reclassify" instead
>>
>>
>> Its not a problem now, but maybe in next updates of package raster 
>> the reclass function may be not available anymore.
>>
>> Cheers,
>> Pablo Riul
>>
>> Departamento de Engenharia e Meio Ambiente
>> Centro de Ciências Aplicadas e Educação
>> Universidade Federal da Paraíba - Campus IV
>> R: Mangueira s/n, Centro CEP: 58.297-000
>> Rio Tinto - Paraíba - Brasil
>>
>>
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>
>
>

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