[Basta-users] repository http://www.ibiblio.org/pub/languages/R/CRAN/bin/macosx/leopard/contrib/2.12

[Owen Jones]

What do you mean by "don't work"?
Can you do summary(out), to see what the output looks like? Or does it fail completely?

Owen



On 8 Nov 2011, at 14:09, Cliff Cunningham wrote:

> Dear Owen,
> 
> 	The problem is that the parallel simulations don't work.  
> 
> 	Your solution worked beautifully, though, I had no trouble finding a new cran mirror.
> 	
> 	All the best!
> 
>    	Cliff Cunningham
> 
> 
>         Professor
> 	Biology Department
>     	Duke University
>         130 Science Drive
> 	Durham NC 27708
> 	Phone 919-660-7356
> 
> http://www.biology.duke.edu/cunningham
> 
> 
> 
> 
> On Nov 8, 2011, at 1:59 PM, Owen Jones wrote:
> 
>> It seems as though, during the basta run, R is requesting access a CRAN repository that is unavailable.
>> It is a warning message, and your basta run should have worked OK.
>> 
>> I'm not sure why it would do that, but if you select an available repository BEFORE you run basta (i.e. when you start up R) it should then work fine without a warning message.
>> 
>> You can do that in R's preferences.
>> 
>> Cheers,
>> Owen
>> 
>> On 8 Nov 2011, at 12:02, Cliff Cunningham wrote:
>> 
>>> Dear Basta,
>>> 
>>> 	Since last evening, I have been receiving this message when I try to run basta in parallel (I don't have system leopard)
>>> 
>>> No problems were detected with the data.
>>> Multiple simulations started...
>>> Warning: unable to access index for repository http://www.ibiblio.org/pub/languages/R/CRAN/bin/macosx/leopard/contrib/2.12
>>> 
>>> here is my command line
>>> 
>>> out <- basta(object = Males.dat$newData, studyStart = 1978, studyEnd = 1982, model="WE" ,burnin=1000 ,niter=10000, nsim=4,parallel=TRUE, ncpus=4)
>>> 
>>> 	
>>> 	Thanks very much!
>>> 
>>>    	Cliff Cunningham
>>> 
>>> 
>>>         Professor
>>> 	Biology Department
>>>     	Duke University
>>>         130 Science Drive
>>> 	Durham NC 27708
>>> 	Phone 919-660-7356
>>> 
>>> http://www.biology.duke.edu/cunningham
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Basta-users mailing list
>>> Basta-users at lists.r-forge.r-project.org
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users
>> 
> 

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