<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">What do you mean by "don't work"?<div>Can you do summary(out), to see what the output looks like? Or does it fail completely?</div><div><br></div><div>Owen</div><div><br><div><br></div><div><br><div><div>On 8 Nov 2011, at 14:09, Cliff Cunningham wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Owen,<div><br><div><span class="Apple-tab-span" style="white-space:pre"> </span>The problem is that the parallel simulations don't work. </div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Your solution worked beautifully, though, I had no trouble finding a new cran mirror.<br><div>
<span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>All the best!</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "> <span class="Apple-converted-space"> </span><span class="Apple-tab-span" style="white-space: pre; "> </span>Cliff Cunningham</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><br class="Apple-interchange-newline"> Professor</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Biology Department</div><div style="font-size: 12px; "> <span class="Apple-tab-span" style="white-space: pre; "> </span>Duke University</div><div style="font-size: 12px; "> 130 Science Drive</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Durham NC 27708<br class="webkit-block-placeholder"></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Phone 919-660-7356<br></div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><a href="http://www.biology.duke.edu/cunningham">http://www.biology.duke.edu/cunningham</a></div><div style="font-size: 12px; "><br class="khtml-block-placeholder"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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<br><div><div>On Nov 8, 2011, at 1:59 PM, Owen Jones wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">It seems as though, during the basta run, R is requesting access a CRAN repository that is unavailable.<div>It is a warning message, and your basta run should have worked OK.</div><div><br><div>I'm not sure why it would do that, but if you select an available repository BEFORE you run basta (i.e. when you start up R) it should then work fine without a warning message.</div><div><br></div><div>You can do that in R's preferences.</div><div><br></div><div>Cheers,</div><div>Owen</div></div><div><br></div><div><div>On 8 Nov 2011, at 12:02, Cliff Cunningham wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Basta,<div><br><div><span class="Apple-tab-span" style="white-space:pre"> </span>Since last evening, I have been receiving this message when I try to run basta in parallel (I don't have system leopard)</div><div><br></div><div><div>No problems were detected with the data.</div><div>Multiple simulations started...</div><div>Warning: unable to access index for repository <a href="http://www.ibiblio.org/pub/languages/R/CRAN/bin/macosx/leopard/contrib/2.12">http://www.ibiblio.org/pub/languages/R/CRAN/bin/macosx/leopard/contrib/2.12</a></div><div><br></div><div>here is my command line</div><div><br></div><div><div>out <- basta(object = Males.dat$newData, studyStart = 1978, studyEnd = 1982, model="WE" ,burnin=1000 ,niter=10000, nsim=4,parallel=TRUE, ncpus=4)</div></div><div><br></div><div>
<div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Thanks very much!</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "> <span class="Apple-converted-space"> </span><span class="Apple-tab-span" style="white-space: pre; "> </span>Cliff Cunningham</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><br class="Apple-interchange-newline"> Professor</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Biology Department</div><div style="font-size: 12px; "> <span class="Apple-tab-span" style="white-space: pre; "> </span>Duke University</div><div style="font-size: 12px; "> 130 Science Drive</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Durham NC 27708<br class="webkit-block-placeholder"></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Phone 919-660-7356<br></div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><a href="http://www.biology.duke.edu/cunningham">http://www.biology.duke.edu/cunningham</a></div><div style="font-size: 12px; "><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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