[adegenet-forum] Question About Adegenet

[Thibaut Jombart]

Dear John-Lee

I think the poppr package has what you need - see "mlg" and related
functions at (working on genind objects):
https://cran.r-project.org/web/packages/poppr/vignettes/poppr_manual.html#mlg

Best
Thibaut

--
Dr Thibaut Jombart
Associate Professor in Outbreak Analytics, London School of Hygiene and
Tropical Medicine
Senior Lecturer in Genetic Analysis, Imperial College London
UK Public Health Rapid Support Team
President of RECON: repidemicsconsortium.org
https://thibautjombart.netlify.com
Twitter: @TeebzR


On Wed, 27 Jan 2021 at 10:53, Walker, John-Lee Sky - (johnleewalker) <
johnleewalker at arizona.edu> wrote:

> Hello,
>
> I am using microsatellite data to distinguish individual bats. I have
> created a genind object with my data. One thing I would like to be able to
> do is determine when I have matching genotypes, in my case it would be if I
> have "recaptured" and individual. I am unsure if the package includes a
> function that makes this possible, or not. I have read the PDF pretty
> thoroughly and explored the forum archives. I would appreciate any feedback
> greatly.
>
> Kind Regards,
> John-Lee
>
> John-Lee Sky Walker
> Graduate Research Assistant
> School of Natural Resources and the Environment
> The University of Arizona
> Tucson, AZ 85721
> Phone: 805-570-7864
>
>
>
>
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