[adegenet-forum] predefined groups (Kimberly Ann McLaughlin)

[Zhian Kamvar]

Hello Kimberly,

Yes, it is possible! It is in fact the intended purpose of the function
(which has proven to be slightly confusing since the first example in the
vignette asks the user to use PC clustering to define groups). I have used
it in my own analyses: https://peerj.com/articles/4152/#fig-6 (figure)
https://github.com/everhartlab/sclerotinia-366/blob/master/results/by-year.md
(code)

Hope that helps,
Zhian


Date: Wed, 5 Feb 2020 17:20:25 +0000
> From: Kimberly Ann McLaughlin <kimberly.mclaughlin at northwestern.edu>
> To: "adegenet-forum at lists.r-forge.r-project.org"
>         <adegenet-forum at lists.r-forge.r-project.org>
> Subject: [adegenet-forum] predefined groups
> Message-ID:
>         <adf173095dff4628b0acb78fc34a20d8 at chcspmbx05.ads.northwestern.edu>
> Content-Type: text/plain; charset="iso-8859-1"
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> Hello,
>
>
> Is it possible to cluster by predefined groups of individuals using DAPC?
>
>
> Thanks!?
>
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