<div dir="ltr"><div dir="ltr"><br></div><div>Hello Kimberly,</div><div><br></div><div>Yes, it is possible! It is in fact the intended purpose of the function (which has proven to be slightly confusing since the first example in the vignette asks the user to use PC clustering to define groups). I have used it in my own analyses: <a href="https://peerj.com/articles/4152/#fig-6">https://peerj.com/articles/4152/#fig-6</a> (figure) <a href="https://github.com/everhartlab/sclerotinia-366/blob/master/results/by-year.md">https://github.com/everhartlab/sclerotinia-366/blob/master/results/by-year.md</a> (code)<br><br></div><div>Hope that helps,</div><div>Zhian<br><br><br></div><div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
Date: Wed, 5 Feb 2020 17:20:25 +0000<br>
From: Kimberly Ann McLaughlin <<a href="mailto:kimberly.mclaughlin@northwestern.edu" target="_blank">kimberly.mclaughlin@northwestern.edu</a>><br>
To: "<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>"<br>
        <<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>><br>
Subject: [adegenet-forum] predefined groups<br>
Message-ID:<br>
        <<a href="mailto:adf173095dff4628b0acb78fc34a20d8@chcspmbx05.ads.northwestern.edu" target="_blank">adf173095dff4628b0acb78fc34a20d8@chcspmbx05.ads.northwestern.edu</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hello,<br>
<br>
<br>
Is it possible to cluster by predefined groups of individuals using DAPC?<br>
<br>
<br>
Thanks!?<br>
<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200205/5cbd0fb2/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200205/5cbd0fb2/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
adegenet-forum mailing list<br>
<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a><br>
<a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum" rel="noreferrer" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</a><br>
<br>
------------------------------<br>
<br>
End of adegenet-forum Digest, Vol 135, Issue 4<br>
**********************************************<br>
</blockquote></div></div></div>