[adegenet-forum] predefined groups

Zhian Kamvar kamvarz at science.oregonstate.edu
Sun Feb 9 15:24:57 CET 2020


Yes, this should be possible, though I'm not sure why you would want to do
that. The posterior assigned groups are in the `$assign` slot of the DAPC
result. You can feed that vector into the DAPC function with the `pop=`
argument.

Best,
Zhian

Date: Thu, 6 Feb 2020 21:24:14 +0000
> From: Kimberly Ann McLaughlin <kimberly.mclaughlin at northwestern.edu>
> To: "adegenet-forum at lists.r-forge.r-project.org"
>         <adegenet-forum at lists.r-forge.r-project.org>
> Subject: Re: [adegenet-forum] predefined groups
> Message-ID: <1581024254583.62726 at northwestern.edu>
> Content-Type: text/plain; charset="iso-8859-1"
>
> ?I'm trying to cluster the groups generated by previous, different DAPC
> runs.
>
> ________________________________
> From: adegenet-forum <adegenet-forum-bounces at lists.r-forge.r-project.org>
> on behalf of Kimberly Ann McLaughlin <kimberly.mclaughlin at northwestern.edu
> >
> Sent: Wednesday, February 5, 2020 11:20 AM
> To: adegenet-forum at lists.r-forge.r-project.org
> Subject: [adegenet-forum] predefined groups
>
>
> Hello,
>
>
> Is it possible to cluster by predefined groups of individuals using DAPC?
>
>
> Thanks!?
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200209/5a3f081b/attachment.html>


More information about the adegenet-forum mailing list