[adegenet-forum] supplementary individual analyses: install devol error

[Zhian Kamvar]

Hi, 

The error you get suggests that you need to install/reset command line tools. Here's what I got when I did a google search for the error:

https://apple.stackexchange.com/a/254381

Go to your Terminal.app and type:

xcode-select --install

You should then be able to install adegenet after that.

-----
Zhian N. Kamvar, Ph. D.
Postdoctoral Researcher (Everhart Lab)
Department of Plant Pathology
University of Nebraska-Lincoln


> 
> Date: Mon, 24 Apr 2017 14:58:45 +0000
> From: "Andres, Jose" <jose.andres at usask.ca>
> To: Thibaut Jombart <thibautjombart at gmail.com>
> Cc: "adegenet-forum at lists.r-forge.r-project.org"
> 	<adegenet-forum at r-forge.wu-wien.ac.at>
> Subject: Re: [adegenet-forum] supplementary individual analyses:
> 	install devol error
> Message-ID: <1493045924932.30957 at usask.ca>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Hi Thibaut,
> 
> I Just tried to install devtools from my Xquartz (i.e. X11) using a vanilla R (3.4.0) session. Unfortunately, I still get the same error. Any thoughts?
> 
> 
> Thanks a lot!
> 
> /Jose
> 
> 
> 
> ________________________________
> From: Thibaut Jombart <thibautjombart at gmail.com>
> Sent: Monday, April 24, 2017 7:27 AM
> To: Andres, Jose
> Cc: adegenet-forum at lists.r-forge.r-project.org
> Subject: Re: [adegenet-forum] supplementary individual analyses: install devol error
> 
> Hi Jose
> 
> this looks like a devtools issue. Can you please try with the current version of R, using a vanilla session (R --vanilla)?
> 
> Best
> Thibaut
> 
> 
> --
> Dr Thibaut Jombart
> Lecturer, Department of Infectious Disease Epidemiology, Imperial College London
> Head of RECON: repidemicsconsortium.org<http://repidemicsconsortium.org>
> sites.google.com/site/thibautjombart/<http://sites.google.com/site/thibautjombart/>
> github.com/thibautjombart<http://github.com/thibautjombart>
> Twitter: @TeebzR<http://twitter.com/TeebzR>
> +44(0)20 7594 3658
> 
> On 21 April 2017 at 20:22, Andres, Jose <jose.andres at usask.ca<mailto:jose.andres at usask.ca>> wrote:
> 
> Hi there,
> I am working on the assignment of supplementary individuals to one of my previous DAPC analyses. Because the know issues with the predict.dapc of the repository version (2.0.1) I'd like to use the devol version of Adegenet. Unfortunately, my compilation fails because of the following error:
> 
> invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLin site:lists.r-forge.r-project.org/pipermail/adegenet-forum/<http://lists.r-forge.r-project.org/pipermail/adegenet-forum/>
> 
> ERROR: compilation failed for package 'adegenet'
> * removing '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'
> * restoring previous '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'
> 
> Any suggestions on how to fix this? I am using R 3.3.2 GUI 1.68 Mavericks build (7288) under a MacOC Sierra 10.12
> 
> Thanks!
> 
> 
> 
> /Jose Andres
> 
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