<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi, <div class=""><br class=""></div><div class="">The error you get suggests that you need to install/reset command line tools. Here's what I got when I did a google search for the error:</div><div class=""><br class=""></div><div class=""><a href="https://apple.stackexchange.com/a/254381" class="">https://apple.stackexchange.com/a/254381</a></div><div class=""><br class=""></div><div class="">Go to your Terminal.app and type:</div><div class=""><br class=""></div><div class="">xcode-select --install</div><div class=""><br class=""></div><div class="">You should then be able to install adegenet after that.</div><div class=""><br class=""></div><div class=""><div class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">-----</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">Zhian N. Kamvar, Ph. D.</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">Postdoctoral Researcher (Everhart Lab)</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">Department of Plant Pathology</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">University of Nebraska-Lincoln</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class=""><br class=""></div><br class="Apple-interchange-newline">
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<div><blockquote type="cite" class=""><div class=""><div class=""><br class="">Date: Mon, 24 Apr 2017 14:58:45 +0000<br class="">From: "Andres, Jose" <<a href="mailto:jose.andres@usask.ca" class="">jose.andres@usask.ca</a>><br class="">To: Thibaut Jombart <<a href="mailto:thibautjombart@gmail.com" class="">thibautjombart@gmail.com</a>><br class="">Cc: "<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" class="">adegenet-forum@lists.r-forge.r-project.org</a>"<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><<a href="mailto:adegenet-forum@r-forge.wu-wien.ac.at" class="">adegenet-forum@r-forge.wu-wien.ac.at</a>><br class="">Subject: Re: [adegenet-forum] supplementary individual analyses:<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>install devol error<br class="">Message-ID: <<a href="mailto:1493045924932.30957@usask.ca" class="">1493045924932.30957@usask.ca</a>><br class="">Content-Type: text/plain; charset="iso-8859-1"<br class=""><br class="">Hi Thibaut,<br class=""><br class="">I Just tried to install devtools from my Xquartz (i.e. X11) using a vanilla R (3.4.0) session. Unfortunately, I still get the same error. Any thoughts?<br class=""><br class=""><br class="">Thanks a lot!<br class=""><br class="">/Jose<br class=""><br class=""><br class=""><br class="">________________________________<br class="">From: Thibaut Jombart <<a href="mailto:thibautjombart@gmail.com" class="">thibautjombart@gmail.com</a>><br class="">Sent: Monday, April 24, 2017 7:27 AM<br class="">To: Andres, Jose<br class="">Cc: <a href="mailto:adegenet-forum@lists.r-forge.r-project.org" class="">adegenet-forum@lists.r-forge.r-project.org</a><br class="">Subject: Re: [adegenet-forum] supplementary individual analyses: install devol error<br class=""><br class="">Hi Jose<br class=""><br class="">this looks like a devtools issue. Can you please try with the current version of R, using a vanilla session (R --vanilla)?<br class=""><br class="">Best<br class="">Thibaut<br class=""><br class=""><br class="">--<br class="">Dr Thibaut Jombart<br class="">Lecturer, Department of Infectious Disease Epidemiology, Imperial College London<br class="">Head of RECON: <a href="http://repidemicsconsortium.org" class="">repidemicsconsortium.org</a><<a href="http://repidemicsconsortium.org" class="">http://repidemicsconsortium.org</a>><br class=""><a href="http://sites.google.com/site/thibautjombart" class="">sites.google.com/site/thibautjombart</a>/<<a href="http://sites.google.com/site/thibautjombart/" class="">http://sites.google.com/site/thibautjombart/</a>><br class=""><a href="http://github.com/thibautjombart" class="">github.com/thibautjombart</a><<a href="http://github.com/thibautjombart" class="">http://github.com/thibautjombart</a>><br class="">Twitter: @TeebzR<<a href="http://twitter.com/TeebzR" class="">http://twitter.com/TeebzR</a>><br class="">+44(0)20 7594 3658<br class=""><br class="">On 21 April 2017 at 20:22, Andres, Jose <<a href="mailto:jose.andres@usask.ca" class="">jose.andres@usask.ca</a><<a href="mailto:jose.andres@usask.ca" class="">mailto:jose.andres@usask.ca</a>>> wrote:<br class=""><br class="">Hi there,<br class="">I am working on the assignment of supplementary individuals to one of my previous DAPC analyses. Because the know issues with the predict.dapc of the repository version (2.0.1) I'd like to use the devol version of Adegenet. Unfortunately, my compilation fails because of the following error:<br class=""><br class="">invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLin site:<a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum" class="">lists.r-forge.r-project.org/pipermail/adegenet-forum</a>/<<a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/" class="">http://lists.r-forge.r-project.org/pipermail/adegenet-forum/</a>><br class=""><br class="">ERROR: compilation failed for package 'adegenet'<br class="">* removing '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'<br class="">* restoring previous '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'<br class=""><br class="">Any suggestions on how to fix this? I am using R 3.3.2 GUI 1.68 Mavericks build (7288) under a MacOC Sierra 10.12<br class=""><br class="">Thanks!<br class=""><br class=""><br class=""><br class="">/Jose Andres<br class=""><br class="">_______________________________________________<br class="">adegenet-forum mailing list<br class=""><a href="mailto:adegenet-forum@lists.r-forge.r-project.org" class="">adegenet-forum@lists.r-forge.r-project.org</a><<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" class="">mailto:adegenet-forum@lists.r-forge.r-project.org</a>><br class=""><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum" class="">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</a><br class=""></div></div></blockquote></div><br class=""></div></body></html>