[adegenet-forum] supplementary individual analyses: install devol error

Andres, Jose jose.andres at usask.ca
Mon Apr 24 16:58:45 CEST 2017

Hi Thibaut,

I Just tried to install devtools from my Xquartz (i.e. X11) using a vanilla R (3.4.0) session. Unfortunately, I still get the same error. Any thoughts?

Thanks a lot!


From: Thibaut Jombart <thibautjombart at gmail.com>
Sent: Monday, April 24, 2017 7:27 AM
To: Andres, Jose
Cc: adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] supplementary individual analyses: install devol error

Hi Jose

this looks like a devtools issue. Can you please try with the current version of R, using a vanilla session (R --vanilla)?


Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology, Imperial College London
Head of RECON: repidemicsconsortium.org<http://repidemicsconsortium.org>
Twitter: @TeebzR<http://twitter.com/TeebzR>
+44(0)20 7594 3658

On 21 April 2017 at 20:22, Andres, Jose <jose.andres at usask.ca<mailto:jose.andres at usask.ca>> wrote:

Hi there,
I am working on the assignment of supplementary individuals to one of my previous DAPC analyses. Because the know issues with the predict.dapc of the repository version (2.0.1) I'd like to use the devol version of Adegenet. Unfortunately, my compilation fails because of the following error:

invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLin site:lists.r-forge.r-project.org/pipermail/adegenet-forum/<http://lists.r-forge.r-project.org/pipermail/adegenet-forum/>

ERROR: compilation failed for package 'adegenet'
* removing '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'
* restoring previous '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/adegenet'

Any suggestions on how to fix this? I am using R 3.3.2 GUI 1.68 Mavericks build (7288) under a MacOC Sierra 10.12


/Jose Andres

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