[adegenet-forum] Fwd: Loading fasta files

[Federico Calboli]

Theebs, we had more info (below)

F

PS next time reply to the list

Begin forwarded message:

> From: Felix Enciso <fenciso13 at gmail.com>
> Subject: Re: [adegenet-forum] Loading fasta files
> Date: 9 July 2012 21:24:21 GMT+01:00
> To: Federico Calboli <f.calboli at imperial.ac.uk>
> 
> Hi,
> 
> My file name is np_join.fasta, and the command line is:
> 
> > sample1 <- system.file("files/np_join.fasta",package="adegenet")
> > goldenberry <- fasta2genlight(sample1, chunk=10)
> 
> Thanks,
> 
> Felix
> 
> 
> On Mon, Jul 9, 2012 at 3:18 PM, Federico Calboli <f.calboli at imperial.ac.uk> wrote:
> what is the name of the file you are trying to load, what *exact* command are you using?
> 
> F
> 
> 
> On 9 Jul 2012, at 21:03, Felix Enciso wrote:
> 
> > Hi,
> >
> > I'm new using adegenet. I have a multifasta file aligned and I'm trying to load it using fasta2genlight but I get this error:
> >
> > Error en if (!ext %in% c("FASTA", "FA", "FAS")) warning("wrong file extension - '.fasta', '.fa' or '.fas' expected"),
> >
> > I really appreciate if some one can help me.
> >
> > Thanks
> >
> > Felix
> >
> > Felix Eugenio Enciso-Rodriguez MSc.
> > Research Assistant
> > Plant Molecular Genetics Laboratory
> > Biotechnology and Bioindustry Center (CBB)
> > Colombian Corporation for Agricultural Research (CORPOICA)
> > Colombia
> > Phone: 57-1-4227300 Ext:1427
> >
> > _______________________________________________
> > adegenet-forum mailing list
> > adegenet-forum at lists.r-forge.r-project.org
> > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
> 
> --
> Federico C. F. Calboli
> Neuroepidemiology and Ageing Research
> Imperial College, St. Mary's Campus
> Norfolk Place, London W2 1PG
> 
> Tel +44 (0)20 75941602   Fax +44 (0)20 75943193
> 
> f.calboli [.a.t] imperial.ac.uk
> f.calboli [.a.t] gmail.com
> 
> 
> 
> 
> -- 
> Felix Eugenio Enciso-Rodriguez MSc.
> Investigador Asistente
> Laboratorio de Genética Molecular Vegetal
> Centro de Biotecnología y Bioindustria (CBB)
> Corporación Colombiana de Investigación Agropecuaria
> Telefono: 57-1-4227300 Ext:1427
> 
> Felix Eugenio Enciso-Rodriguez MSc.
> Research Assistant
> Plant Molecular Genetics Laboratory
> Biotechnology and Bioindustry Center (CBB)
> Colombian Corporation for Agricultural Research (CORPOICA)
> Colombia
> Phone: 57-1-4227300 Ext:1427
> 

--
Federico C. F. Calboli
Neuroepidemiology and Ageing Research
Imperial College, St. Mary's Campus
Norfolk Place, London W2 1PG

Tel +44 (0)20 75941602   Fax +44 (0)20 75943193

f.calboli [.a.t] imperial.ac.uk
f.calboli [.a.t] gmail.com

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