[adegenet-forum] Loading fasta files

[Jombart, Thibaut]

Hello, 

the error just tells you that the extension of you fasta file is wrong. It should be .fasta, .fa, or .fas. 

Your command line would help.

Cheers

Thibaut

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Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - School of Public Health
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
t.jombart at imperial.ac.uk
http://sites.google.com/site/thibautjombart/
http://adegenet.r-forge.r-project.org/
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Felix Enciso [fenciso13 at gmail.com]
Sent: 09 July 2012 21:03
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Loading fasta files

Hi,

I'm new using adegenet. I have a multifasta file aligned and I'm trying to load it using fasta2genlight but I get this error:

Error en if (!ext %in% c("FASTA", "FA", "FAS")) warning("wrong file extension - '.fasta', '.fa' or '.fas' expected"),

I really appreciate if some one can help me.

Thanks

Felix

Felix Eugenio Enciso-Rodriguez MSc.
Research Assistant
Plant Molecular Genetics Laboratory
Biotechnology and Bioindustry Center (CBB)
Colombian Corporation for Agricultural Research (CORPOICA)
Colombia
Phone: 57-1-4227300 Ext:1427