<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Theebs, we had more info (below)<div><br></div><div>F</div><div><br></div><div>PS next time reply to the list<br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1.0);"><b>From: </b></span><span style="font-family:'Helvetica'; font-size:medium;">Felix Enciso <<a href="mailto:fenciso13@gmail.com">fenciso13@gmail.com</a>><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1.0);"><b>Subject: </b></span><span style="font-family:'Helvetica'; font-size:medium;"><b>Re: [adegenet-forum] Loading fasta files</b><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1.0);"><b>Date: </b></span><span style="font-family:'Helvetica'; font-size:medium;">9 July 2012 21:24:21 GMT+01:00<br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1.0);"><b>To: </b></span><span style="font-family:'Helvetica'; font-size:medium;">Federico Calboli <<a href="mailto:f.calboli@imperial.ac.uk">f.calboli@imperial.ac.uk</a>><br></span></div><br><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">Hi,<br><br>My file name is np_join.fasta, and the command line is:<br><br>> sample1 <- system.file("files/np_join.fasta",package="adegenet")<br>> goldenberry <- fasta2genlight(sample1, chunk=10)<br>
<br>Thanks,<br><br>Felix<br><br><br><div class="gmail_quote">On Mon, Jul 9, 2012 at 3:18 PM, Federico Calboli <span dir="ltr"><<a href="mailto:f.calboli@imperial.ac.uk" target="_blank">f.calboli@imperial.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">what is the name of the file you are trying to load, what *exact* command are you using?<br>
<br>
F<br>
<div><div class="h5"><br>
<br>
On 9 Jul 2012, at 21:03, Felix Enciso wrote:<br>
<br>
> Hi,<br>
><br>
> I'm new using adegenet. I have a multifasta file aligned and I'm trying to load it using fasta2genlight but I get this error:<br>
><br>
> Error en if (!ext %in% c("FASTA", "FA", "FAS")) warning("wrong file extension - '.fasta', '.fa' or '.fas' expected"),<br>
><br>
> I really appreciate if some one can help me.<br>
><br>
> Thanks<br>
><br>
> Felix<br>
><br>
> Felix Eugenio Enciso-Rodriguez MSc.<br>
> Research Assistant<br>
> Plant Molecular Genetics Laboratory<br>
> Biotechnology and Bioindustry Center (CBB)<br>
> Colombian Corporation for Agricultural Research (CORPOICA)<br>
> Colombia<br>
> Phone: <a href="tel:57-1-4227300%20Ext%3A1427" value="+15714227300">57-1-4227300 Ext:1427</a><br>
><br>
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<br>
--<br>
Federico C. F. Calboli<br>
Neuroepidemiology and Ageing Research<br>
Imperial College, St. Mary's Campus<br>
Norfolk Place, London W2 1PG<br>
<br>
Tel <a href="tel:%2B44%20%280%2920%2075941602" value="+442075941602">+44 (0)20 75941602</a> Fax <a href="tel:%2B44%20%280%2920%2075943193" value="+442075943193">+44 (0)20 75943193</a><br>
<br>
f.calboli [.a.t] <a href="http://imperial.ac.uk/" target="_blank">imperial.ac.uk</a><br>
f.calboli [.a.t] <a href="http://gmail.com/" target="_blank">gmail.com</a><br>
<br>
</blockquote></div><br><br clear="all"><br>-- <br>Felix Eugenio Enciso-Rodriguez MSc.<br>Investigador Asistente<br>Laboratorio de Genética Molecular Vegetal<br>Centro de Biotecnología y Bioindustria (CBB)<br>Corporación Colombiana de Investigación Agropecuaria<br>
Telefono: 57-1-4227300 Ext:1427<br><br>Felix Eugenio Enciso-Rodriguez MSc.<br>Research Assistant<br>Plant Molecular Genetics Laboratory<br>Biotechnology and Bioindustry Center (CBB)<br>Colombian Corporation for Agricultural Research (CORPOICA)<br>
Colombia<font color="#888888"><br>Phone: <a value="+15714227300">57-1-4227300 Ext:1427</a></font><br><br>
</blockquote></div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; ">--<br>Federico C. F. Calboli<br>Neuroepidemiology and Ageing Research<br>Imperial College, St. Mary's Campus<br>Norfolk Place, London W2 1PG<br><br>Tel +44 (0)20 75941602 Fax +44 (0)20 75943193<br><br>f.calboli [.a.t] <a href="http://imperial.ac.uk">imperial.ac.uk</a><br>f.calboli [.a.t] <a href="http://gmail.com">gmail.com</a><br></span>
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