[adegenet-forum] problems loading new version of adegenet

[Jombart, Thibaut]

Damn, that's a lot of things messing up from the start.

There is still a bit of FAQ #4 there, so:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")
install.packages("adegenet", dep=TRUE)

And then try to load the package. As far as I know it works fine on Leopard. In 1.3-1 the dependency on graph will definitely be removed.

Cheers

Thibaut


________________________________
From: adegenet-forum-bounces at r-forge.wu-wien.ac.at [adegenet-forum-bounces at r-forge.wu-wien.ac.at] on behalf of Vinson Doyle [sonofvin at gmail.com]
Sent: 06 July 2011 18:26
To: adegenet-forum at r-forge.wu-wien.ac.at
Subject: [adegenet-forum] problems loading new version of adegenet

I was working with adegenet 1.2.8 today when I the function transp() could not be found.  I thought it might have to do with the version of adegenet and the version of R, so I updated to R 2.13.0 and adegenet 1.3.0.  Now it seems that adegenet will not load and I am unable to run any scripts.  I can install it, but if I go to package manager and try to load it (or from the console) the following message is displayed:

Loading required package: MASS
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/adegenet/libs/i386/adegenet.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/adegenet/libs/i386/adegenet.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/adegenet/libs/i386/adegenet.so
  Reason: image not found
Error in library(adegenet) : .First.lib failed for 'adegenet'
Error in as.environment(pos) :
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
starting httpd help server ... done

I am working on Mac OS X

Thanks,
V
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