[FLR-list] Plotting FLSR object

[Marc Taylor]

Hi all,

I was curious for an answer to this as well. I thought I would chime in 
with an example where the same happens for me.

The plot of the FLSR object works until one loads the FLBRP package:

###########
library(FLCore)
data("ple4")
ple4_sr <- as.FLSR(ple4)
model(ple4_sr) <- "ricker"
ple4_sr <- fmle(ple4_sr)
plot(ple4_sr) # works

library(FLBRP)
plot(ple4_sr) # works no longer
############

Cheers,
Marc

Dr. Marc Taylor
Marine Lebende Resourcen / Marine Living Resources
Thünen-Institut für Seefischerei / Thünen Institute of Sea Fisheries
Palmaille 9
22767 Hamburg, Germany

Tel:  +49 40 38905-143
Mail: marc.taylor at ti.bund.de
Web:  www.ti.bund.de

On 1/28/2016 3:43 PM, Iago MOSQUEIRA (JRC) wrote:
> Hi,
>
> It works here with the same versions.
>
> Can you try
>
> - on a clean session loading ggplotFL and running it
> - clean session, load ggplot2, then ggplotFL, then run
>
> and report the results?
>
> There could also be some method conflict withj some of the other pkgs 
> in your session.
>
> Cheers,
>
>
> Iago
>
> On 26/01/16 13:18, Piera Carpi wrote:
>> Hi all,
>> I’m trying to plot a FLSR object, but whenever I do:
>>
>> sr <- fmle(as.FLSR(stk, model=“ricker”))
>> plot(sr)
>>
>> I obtain the following output, and no plots at all:
>>
>> TableGrob (3 x 2) "arrange": 6 grobs
>>    z     cells    name           grob
>> 1 1 (1-1,1-1) arrange gtable[layout]
>> 2 2 (1-1,2-2) arrange gtable[layout]
>> 3 3 (2-2,1-1) arrange gtable[layout]
>> 4 4 (2-2,2-2) arrange gtable[layout]
>> 5 5 (3-3,1-1) arrange gtable[layout]
>> 6 6 (3-3,2-2) arrange gtable[layout]
>>
>>
>> Below info on my R session:
>>
>>
>> R version 3.2.2 (2015-08-14)
>> Platform: x86_64-pc-linux-gnu (64-bit)
>> Running under: Ubuntu 14.04.3 LTS
>>
>> locale:
>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>> LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>   LC_PAPER=en_US.UTF-8       LC_NAME=C
>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] grid      stats     graphics  grDevices utils     datasets methods
>>    base
>>
>> other attached packages:
>>   [1] msy_0.1.16            FLSAM_1.0 FLBRP_2.5.20140822
>>   plyr_1.8.3            ggplotFL_2.5.20141027
>>   [6] reshape2_1.4.1        gridExtra_2.0.0       ggplot2_1.0.1
>> FLa4a_0.300.2         copula_0.999-13
>> [11] triangle_0.8          mgcv_1.8-7            nlme_3.1-121
>>   FLXSA_2.5.20140808    FLAssess_2.5.20130716
>> [16] FLash_2.5.2           FLCore_2.5.20150513   MASS_7.3-43
>> lattice_0.20-33       RevoUtilsMath_3.2.2
>>
>> loaded via a namespace (and not attached):
>>   [1] Rcpp_0.12.1      tools_3.2.2      digest_0.6.8 gtable_0.1.2
>>    pspline_1.0-17   Matrix_1.2-2     yaml_2.1.13
>>   [8] mvtnorm_1.0-3    proto_0.3-10     knitr_1.11 stringr_1.0.0
>>   stats4_3.2.2     ADGofTest_0.3    rmarkdown_0.7
>> [15] magrittr_1.5     htmltools_0.2.6  scales_0.3.0 stabledist_0.7-0
>> colorspace_1.2-6 labeling_0.3     stringi_0.5-5
>> [22] gsl_1.9-10       munsell_0.4.2”
>>
>>
>> Any idea why?
>>
>> Thanks in advance!
>>
>> Piera
>>
>>
>>
>>
>> ----------------------------------
>> Piera Carpi, Ph.D.
>> Istituto di Scienze del Mare (CNR-ISMAR)
>> Sezione Pesca Marittima-Ancona
>> Largo Fiera della Pesca
>> 60125, Ancona - ITALY
>> Tel: 071-2078858
>> Fax: 071-55313
>> e-mail: piera.carpi at an.ismar.cnr.it <mailto:piera.carpi at an.ismar.cnr.it>
>>
>>
>>
>>
>>
>> _______________________________________________
>> flr-list mailing list
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>>
>

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