[FLR-list] Plotting FLSR object

[Iago MOSQUEIRA (JRC)]

Hi,

It works here with the same versions.

Can you try

- on a clean session loading ggplotFL and running it
- clean session, load ggplot2, then ggplotFL, then run

and report the results?

There could also be some method conflict withj some of the other pkgs in 
your session.

Cheers,


Iago

On 26/01/16 13:18, Piera Carpi wrote:
> Hi all,
> I’m trying to plot a FLSR object, but whenever I do:
>
> sr <- fmle(as.FLSR(stk, model=“ricker”))
> plot(sr)
>
> I obtain the following output, and no plots at all:
>
> TableGrob (3 x 2) "arrange": 6 grobs
>    z     cells    name           grob
> 1 1 (1-1,1-1) arrange gtable[layout]
> 2 2 (1-1,2-2) arrange gtable[layout]
> 3 3 (2-2,1-1) arrange gtable[layout]
> 4 4 (2-2,2-2) arrange gtable[layout]
> 5 5 (3-3,1-1) arrange gtable[layout]
> 6 6 (3-3,2-2) arrange gtable[layout]
>
>
> Below info on my R session:
>
>
> R version 3.2.2 (2015-08-14)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 14.04.3 LTS
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   LC_PAPER=en_US.UTF-8       LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets  methods
>    base
>
> other attached packages:
>   [1] msy_0.1.16            FLSAM_1.0             FLBRP_2.5.20140822
>   plyr_1.8.3            ggplotFL_2.5.20141027
>   [6] reshape2_1.4.1        gridExtra_2.0.0       ggplot2_1.0.1
> FLa4a_0.300.2         copula_0.999-13
> [11] triangle_0.8          mgcv_1.8-7            nlme_3.1-121
>   FLXSA_2.5.20140808    FLAssess_2.5.20130716
> [16] FLash_2.5.2           FLCore_2.5.20150513   MASS_7.3-43
> lattice_0.20-33       RevoUtilsMath_3.2.2
>
> loaded via a namespace (and not attached):
>   [1] Rcpp_0.12.1      tools_3.2.2      digest_0.6.8     gtable_0.1.2
>    pspline_1.0-17   Matrix_1.2-2     yaml_2.1.13
>   [8] mvtnorm_1.0-3    proto_0.3-10     knitr_1.11       stringr_1.0.0
>   stats4_3.2.2     ADGofTest_0.3    rmarkdown_0.7
> [15] magrittr_1.5     htmltools_0.2.6  scales_0.3.0     stabledist_0.7-0
> colorspace_1.2-6 labeling_0.3     stringi_0.5-5
> [22] gsl_1.9-10       munsell_0.4.2”
>
>
> Any idea why?
>
> Thanks in advance!
>
> Piera
>
>
>
>
> ----------------------------------
> Piera Carpi, Ph.D.
> Istituto di Scienze del Mare (CNR-ISMAR)
> Sezione Pesca Marittima-Ancona
> Largo Fiera della Pesca
> 60125, Ancona - ITALY
> Tel: 071-2078858
> Fax: 071-55313
> e-mail: piera.carpi at an.ismar.cnr.it <mailto:piera.carpi at an.ismar.cnr.it>
>
>
>
>
>
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-- 
Dr Iago Mosqueira

European Commission – Joint Research Center
Institute for the Protection and Security of the Citizen (IPSC)
Maritime Affairs Unit G03
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