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Hi all,<br>
<br>
I was curious for an answer to this as well. I thought I would chime
in with an example where the same happens for me.<br>
<br>
The plot of the FLSR object works until one loads the FLBRP package:<br>
<br>
<font face="Courier New, Courier, monospace">###########<br>
library(FLCore)<br>
data("ple4") <br>
ple4_sr <- as.FLSR(ple4) <br>
model(ple4_sr) <- "ricker"<br>
ple4_sr <- fmle(ple4_sr)<br>
plot(ple4_sr) # works<br>
<br>
library(FLBRP)<br>
plot(ple4_sr) # works no longer<br>
############<br>
</font><br>
Cheers, <br>
Marc
<pre class="moz-signature" cols="72">Dr. Marc Taylor
Marine Lebende Resourcen / Marine Living Resources
Thünen-Institut für Seefischerei / Thünen Institute of Sea Fisheries
Palmaille 9
22767 Hamburg, Germany
Tel: +49 40 38905-143
Mail: <a class="moz-txt-link-abbreviated" href="mailto:marc.taylor@ti.bund.de">marc.taylor@ti.bund.de</a>
Web: <a class="moz-txt-link-abbreviated" href="http://www.ti.bund.de">www.ti.bund.de</a></pre>
<div class="moz-cite-prefix">On 1/28/2016 3:43 PM, Iago MOSQUEIRA
(JRC) wrote:<br>
</div>
<blockquote cite="mid:56AA2917.8060406@jrc.ec.europa.eu" type="cite">Hi,
<br>
<br>
It works here with the same versions.
<br>
<br>
Can you try
<br>
<br>
- on a clean session loading ggplotFL and running it
<br>
- clean session, load ggplot2, then ggplotFL, then run
<br>
<br>
and report the results?
<br>
<br>
There could also be some method conflict withj some of the other
pkgs in your session.
<br>
<br>
Cheers,
<br>
<br>
<br>
Iago
<br>
<br>
On 26/01/16 13:18, Piera Carpi wrote:
<br>
<blockquote type="cite">Hi all,
<br>
I’m trying to plot a FLSR object, but whenever I do:
<br>
<br>
sr <- fmle(as.FLSR(stk, model=“ricker”))
<br>
plot(sr)
<br>
<br>
I obtain the following output, and no plots at all:
<br>
<br>
TableGrob (3 x 2) "arrange": 6 grobs
<br>
z cells name grob
<br>
1 1 (1-1,1-1) arrange gtable[layout]
<br>
2 2 (1-1,2-2) arrange gtable[layout]
<br>
3 3 (2-2,1-1) arrange gtable[layout]
<br>
4 4 (2-2,2-2) arrange gtable[layout]
<br>
5 5 (3-3,1-1) arrange gtable[layout]
<br>
6 6 (3-3,2-2) arrange gtable[layout]
<br>
<br>
<br>
Below info on my R session:
<br>
<br>
<br>
R version 3.2.2 (2015-08-14)
<br>
Platform: x86_64-pc-linux-gnu (64-bit)
<br>
Running under: Ubuntu 14.04.3 LTS
<br>
<br>
locale:
<br>
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
<br>
LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
<br>
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
<br>
LC_PAPER=en_US.UTF-8 LC_NAME=C
<br>
[9] LC_ADDRESS=C LC_TELEPHONE=C
<br>
LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
<br>
<br>
attached base packages:
<br>
[1] grid stats graphics grDevices utils datasets
methods
<br>
base
<br>
<br>
other attached packages:
<br>
[1] msy_0.1.16 FLSAM_1.0
FLBRP_2.5.20140822
<br>
plyr_1.8.3 ggplotFL_2.5.20141027
<br>
[6] reshape2_1.4.1 gridExtra_2.0.0 ggplot2_1.0.1
<br>
FLa4a_0.300.2 copula_0.999-13
<br>
[11] triangle_0.8 mgcv_1.8-7 nlme_3.1-121
<br>
FLXSA_2.5.20140808 FLAssess_2.5.20130716
<br>
[16] FLash_2.5.2 FLCore_2.5.20150513 MASS_7.3-43
<br>
lattice_0.20-33 RevoUtilsMath_3.2.2
<br>
<br>
loaded via a namespace (and not attached):
<br>
[1] Rcpp_0.12.1 tools_3.2.2 digest_0.6.8
gtable_0.1.2
<br>
pspline_1.0-17 Matrix_1.2-2 yaml_2.1.13
<br>
[8] mvtnorm_1.0-3 proto_0.3-10 knitr_1.11
stringr_1.0.0
<br>
stats4_3.2.2 ADGofTest_0.3 rmarkdown_0.7
<br>
[15] magrittr_1.5 htmltools_0.2.6 scales_0.3.0
stabledist_0.7-0
<br>
colorspace_1.2-6 labeling_0.3 stringi_0.5-5
<br>
[22] gsl_1.9-10 munsell_0.4.2”
<br>
<br>
<br>
Any idea why?
<br>
<br>
Thanks in advance!
<br>
<br>
Piera
<br>
<br>
<br>
<br>
<br>
----------------------------------
<br>
Piera Carpi, Ph.D.
<br>
Istituto di Scienze del Mare (CNR-ISMAR)
<br>
Sezione Pesca Marittima-Ancona
<br>
Largo Fiera della Pesca
<br>
60125, Ancona - ITALY
<br>
Tel: 071-2078858
<br>
Fax: 071-55313
<br>
e-mail: <a class="moz-txt-link-abbreviated" href="mailto:piera.carpi@an.ismar.cnr.it">piera.carpi@an.ismar.cnr.it</a>
<a class="moz-txt-link-rfc2396E" href="mailto:piera.carpi@an.ismar.cnr.it"><mailto:piera.carpi@an.ismar.cnr.it></a>
<br>
<br>
<br>
<br>
<br>
<br>
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<br>
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</blockquote>
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