[adegenet-forum] Per locus pairwise Fst

Jombart, Thibaut t.jombart at imperial.ac.uk
Mon Jul 14 15:13:38 CEST 2014

Hi there, 

you can use seploc to separate loci, and lapply over the resulting list using your prefered fst function.

From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Vikram Chhatre [crypticlineage at gmail.com]
Sent: 14 July 2014 14:01
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Per locus pairwise Fst

Good morning.

I would like to estimate per locus pairwise Fst for populations, but it appears that Adegenet only estimates this over all loci (i.e. single matrix).  What I would like is one matrix per locus.  Has anyone modified the functions or know of alternative programs that can do this?


More information about the adegenet-forum mailing list