[adegenet-forum] Per locus pairwise Fst

Vojtěch Zeisek vojta at trapa.cz
Mon Jul 14 15:09:34 CEST 2014

Good afternoon. :-P

Dne Po 14. července 2014 09:01:03, Vikram Chhatre napsal(a):
> Good morning.
> I would like to estimate per locus pairwise Fst for populations, but it
> appears that Adegenet only estimates this over all loci (i.e. single
> matrix).  What I would like is one matrix per locus.  Has anyone modified
> the functions or know of alternative programs that can do this?

Try package diveRsity. It requires genepop file and works only for haploid and 
diploid data (as far as I know), but otherwise it should do what You wish. ;-)

> Thanks
> Vikram


Vojtěch Zeisek

Department of Botany, Faculty of Science
Charles University in Prague
Benátská 2, Prague, 12801, CZ

Institute of Botany, Academy of Science
Zámek 1, Průhonice, 25243, CZ

Czech Republic
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