[adegenet-forum] Per locus pairwise Fst
crypticlineage at gmail.com
Mon Jul 14 15:16:59 CEST 2014
Perfect! Thank you for both solutions.
On Mon, Jul 14, 2014 at 9:13 AM, Jombart, Thibaut <t.jombart at imperial.ac.uk>
> Hi there,
> you can use seploc to separate loci, and lapply over the resulting list
> using your prefered fst function.
> From: adegenet-forum-bounces at lists.r-forge.r-project.org [
> adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Vikram
> Chhatre [crypticlineage at gmail.com]
> Sent: 14 July 2014 14:01
> To: adegenet-forum at lists.r-forge.r-project.org
> Subject: [adegenet-forum] Per locus pairwise Fst
> Good morning.
> I would like to estimate per locus pairwise Fst for populations, but it
> appears that Adegenet only estimates this over all loci (i.e. single
> matrix). What I would like is one matrix per locus. Has anyone modified
> the functions or know of alternative programs that can do this?
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