[Vegan-commits] r2432 - pkg/vegan/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Feb 12 13:45:53 CET 2013
Author: jarioksa
Date: 2013-02-12 13:45:52 +0100 (Tue, 12 Feb 2013)
New Revision: 2432
Modified:
pkg/vegan/man/cca.Rd
Log:
language and tweaks
Modified: pkg/vegan/man/cca.Rd
===================================================================
--- pkg/vegan/man/cca.Rd 2013-02-11 18:34:53 UTC (rev 2431)
+++ pkg/vegan/man/cca.Rd 2013-02-12 12:45:52 UTC (rev 2432)
@@ -105,9 +105,9 @@
frames).
The formula can include a special term \code{Condition}
for conditioning variables (``covariables'') ``partialled out'' before
- analysis. So the following commands are equivalent: \code{cca(X, Y,
- Z)}, \code{cca(X ~ Y + Condition(Z))}, where \code{Y} and \code{Z}
- refer to constraints and conditions matrices respectively.
+ analysis. So the following commands are equivalent:
+ \code{cca(X, Y, Z)}, \code{cca(X ~ Y + Condition(Z))}, where \code{Y}
+ and \code{Z} refer to constraints and conditions matrices respectively.
Constrained correspondence analysis is indeed a constrained method:
CCA does not try to display all variation in the
@@ -198,12 +198,12 @@
This help page describes two constrained ordination functions,
\code{cca} and \code{rda}. A related method, distance-based
redundancy analysis (dbRDA) is described separately
- (\code{\link{capscale}}). All these function return similar objects
+ (\code{\link{capscale}}). All these functions return similar objects
(described in \code{\link{cca.object}}). There are numerous support
- functions that can used to access the result object. In the list
- below, functions of type \code{cca} will handle all ordination
- objects, and functions of \code{rda} only handle \code{rda} and
- \code{\link{capscale}} results.
+ functions that can be used to access the result object. In the list
+ below, functions of type \code{cca} will handle all three constrained
+ ordination objects, and functions of \code{rda} only handle \code{rda}
+ and \code{\link{capscale}} results.
The main plotting functions are \code{\link{plot.cca}} for all
methods, and \code{\link{biplot.rda}} for RDA and dbRDA. However,
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