[Vegan-commits] r340 - in pkg: R inst man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2008-05-07 21:59:36 +0200 (Wed, 07 May 2008)
New Revision: 340

Removed:
   pkg/R/ordispantree.R
Modified:
   pkg/inst/ChangeLog
   pkg/man/vegan-internal.Rd
Log:
removed ordispantree (deprecated and defunct for a long time)

Deleted: pkg/R/ordispantree.R
===================================================================
--- pkg/R/ordispantree.R	2008-05-07 13:54:12 UTC (rev 339)
+++ pkg/R/ordispantree.R	2008-05-07 19:59:36 UTC (rev 340)
@@ -1,10 +0,0 @@
-"ordispantree" <-
-    function(ord, tree, display = "sites",  ...)
-{
-    stop("'ordispantree' is deprecated: use 'lines.spantree'")
-    ord <- scores(ord, display = display)
-    if (is.list(tree) && !is.null(tree$kid))
-        tree <- tree$kid
-    segments(ord[-1,1], ord[-1,2], ord[tree, 1], ord[tree, 2], ...)
-    invisible()
-}

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2008-05-07 13:54:12 UTC (rev 339)
+++ pkg/inst/ChangeLog	2008-05-07 19:59:36 UTC (rev 340)
@@ -23,6 +23,9 @@
 	* metaMDSdist: argument 'add' gained new alternative "ignore" to
 	do nothing with zero distances. This can only and should be used
 	with metric scaling (cmdscale(), capscale()). 
+
+	* ordispantree: removed after being deprecated and defunct for a
+	long time. Use lines.spantree instead.
 	
 Version 1.12-13 (closed May 7, 2008)
 

Modified: pkg/man/vegan-internal.Rd
===================================================================
--- pkg/man/vegan-internal.Rd	2008-05-07 13:54:12 UTC (rev 339)
+++ pkg/man/vegan-internal.Rd	2008-05-07 19:59:36 UTC (rev 340)
@@ -4,7 +4,6 @@
 \alias{permuted.index}
 \alias{centroids.cca}
 \alias{ordiTerminfo}
-\alias{ordispantree}
 \alias{pasteCall}
 \alias{ordiArrowMul}
 \title{Internal vegan functions}
@@ -19,7 +18,6 @@
 ordiArrowMul(x, at = c(0,0), fill = 0.75)
 centroids.cca(x, mf, wt)
 permuted.index(n, strata)
-ordispantree(ord, tree, display = "sites", ...)
 pasteCall(call, prefix = "Call:")
 }