[Stacomir-commits] r455 - pkg/stacomir

[noreply at r-forge.r-project.org]

Author: legrand
Date: 2017-08-31 15:07:18 +0200 (Thu, 31 Aug 2017)
New Revision: 455

Modified:
   pkg/stacomir/README.Rmd
   pkg/stacomir/README.md
Log:


Modified: pkg/stacomir/README.Rmd
===================================================================
--- pkg/stacomir/README.Rmd	2017-08-31 08:39:28 UTC (rev 454)
+++ pkg/stacomir/README.Rmd	2017-08-31 13:07:18 UTC (rev 455)
@@ -64,7 +64,7 @@
 Data structure
 -------------------    
 The open source postgresql database was built on the following concepts.
-*Contact the authors to get a copy of the database*.
+*Contact the authors to get a copy of the structure of the database*.
 
 ### Infrastructure
 A migration report is always built on a section of a river. However, dam and
@@ -192,7 +192,7 @@
 at the Arzal dam in the
 Vilaine river (France).
 We are evaluating the migration
-of all stages of eel (glass eel CIV, yellow eel AGJ and silver eel AGJ).
+of all stages of eel (glass eel CIV, yellow eel AGJ and silver eel AGG).
 Glass
 eel and yellow eel migrate to the watershed while silver eel
 are migrating back

Modified: pkg/stacomir/README.md
===================================================================
--- pkg/stacomir/README.md	2017-08-31 08:39:28 UTC (rev 454)
+++ pkg/stacomir/README.md	2017-08-31 13:07:18 UTC (rev 455)
@@ -58,7 +58,7 @@
 Data structure
 -------------------    
 The open source postgresql database was built on the following concepts.
-*Contact the authors to get a copy of the database*.
+*Contact the authors to get a copy of the structure of the database*.
 
 ### Infrastructure
 A migration report is always built on a section of a river. However, dam and
@@ -104,9 +104,22 @@
 * an acoustic counting device, 
 * etc.
 
+#### Operating periods of the devices
+Both counting and crossing devices are monitored to have clear indications of
+operating periods. These informations are really important to better interpret
+fish migration data.
+ 
 #### Environmental monitoring station
+To better understand migration of fish the database allow to insert information
+about environmental condition at a fish monitoring station. Different
+environmental parameters are available like :
+* turbidity,
+* atmospheric pressure,
+* temperature (both of the river and of the air),
+* flow,
+* lunar cycle,
+* etc.
 
-
 ### Migration
 Whatever infrastructure is all fishes passing through a counting device are
 monitored.
@@ -120,7 +133,14 @@
 species and stage determined and counted.
 
 #### Other features
+For each fish passing the counting device features like size, weight, sex, age,
+etc. can be monitored as well as :
+* the futur of the fish (released, death, farmed, etc.),
+* tagging (2 possibilities : read of existing tag or lay of new tag),
+* pathologies,
+* genetic samples.
 
+
  Package structure
 --------------------
 The package relies on S4 classes. *Referential classes* are used to access data