[Stacomir-commits] r454 - pkg/stacomir

[noreply at r-forge.r-project.org]

Author: legrand
Date: 2017-08-31 10:39:28 +0200 (Thu, 31 Aug 2017)
New Revision: 454

Modified:
   pkg/stacomir/README.Rmd
   pkg/stacomir/README.md
Log:


Modified: pkg/stacomir/README.Rmd
===================================================================
--- pkg/stacomir/README.Rmd	2017-08-30 16:25:55 UTC (rev 453)
+++ pkg/stacomir/README.Rmd	2017-08-31 08:39:28 UTC (rev 454)
@@ -110,9 +110,22 @@
 * an acoustic counting device, 
 * etc.
 
+#### Operating periods of the devices
+Both counting and crossing devices are monitored to have clear indications of
+operating periods. These informations are really important to better interpret
+fish migration data.
+ 
 #### Environmental monitoring station
+To better understand migration of fish the database allow to insert information
+about environmental condition at a fish monitoring station. Different
+environmental parameters are available like :
+* turbidity,
+* atmospheric pressure,
+* temperature (both of the river and of the air),
+* flow,
+* lunar cycle,
+* etc.
 
-
 ### Migration
 Whatever infrastructure is all fishes passing through a counting device are
 monitored.
@@ -126,7 +139,14 @@
 species and stage determined and counted.
 
 #### Other features
+For each fish passing the counting device features like size, weight, sex, age,
+etc. can be monitored as well as :
+* the futur of the fish (released, death, farmed, etc.),
+* tagging (2 possibilities : read of existing tag or lay of new tag),
+* pathologies,
+* genetic samples.
 
+
  Package structure
 --------------------
 The package relies on S4 classes. *Referential classes* are used to access data

Modified: pkg/stacomir/README.md
===================================================================
--- pkg/stacomir/README.md	2017-08-30 16:25:55 UTC (rev 453)
+++ pkg/stacomir/README.md	2017-08-31 08:39:28 UTC (rev 454)
@@ -214,15 +214,22 @@
  data("r_mig_mult_dc")
  assign("report_dc",r_mig_mult_dc,envir=envir_stacomi)
  r_mig_mult<-calcule(r_mig_mult,silent=TRUE)
+ #> Error in (function (classes, fdef, mtable) : unable to find an inherited method for function 'calcule' for signature '"report_mig_mult"'
  ```
 
 Individual plot for all DC, taxa and stage where data present
 Silent=TRUE to turn off messages
 
 
-![plot of chunk rmmmult](man/figures/README-rmmmult-1.png)
+
+```
+#> Error in as.double(y): cannot coerce type 'S4' to vector of type 'double'
+```
 Ci dessous ne marche pas générer à la main puis expliquer et lien
 
+```
+#> Error in as.double(y): cannot coerce type 'S4' to vector of type 'double'
+```
 ![plot of chunk rmmmult](man/figures/README-rmmstd-1.png)