[Soiltexture-commits] r42 - / pkg pkg/soiltexture pkg/soiltexture/R pkg/soiltexture/inst/doc pkg/soiltexture/man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Sep 22 15:54:41 CEST 2010 

Author: jmoeys
Date: 2010-09-22 15:54:40 +0200 (Wed, 22 Sep 2010)
New Revision: 42

Added:
   pkg/soiltexture_1.02.tar.gz
   rcmdwrapper_1.02.zip
Modified:
   Sweave_wrapper.R
   pkg/soiltexture/DESCRIPTION
   pkg/soiltexture/R/soiltexture.R
   pkg/soiltexture/inst/doc/Rplots.pdf
   pkg/soiltexture/inst/doc/soiltexture_vignette.pdf
   pkg/soiltexture/inst/doc/transformations.pdf
   pkg/soiltexture/man/soiltexture-package.Rd
   pkg/soiltexture_1.02.zip
   soiltexture_compile.R
Log:
Corrected a bug in TT.points.in.classes() (occurring when transforming texture classes & setting specific css.names)

Modified: Sweave_wrapper.R
===================================================================
--- Sweave_wrapper.R	2010-09-13 16:18:16 UTC (rev 41)
+++ Sweave_wrapper.R	2010-09-22 13:54:40 UTC (rev 42)
@@ -1,16 +1,19 @@
-texi2dvi.wrapper <- function 
+texi2dvi.wrapper <- function(# Internal. Wrapper for tools:texi2dvi.
 ### This function is a wrapper to tools:texi2dvi that also deletes 
 ### the images when the pdf file was created
 
-(   # 
     file.name.root, 
 ### Root of the sweave (and tex) file name (without extention) 
+
     work.wd, 
 ### Path of the working directory 
+
     inout.dir, 
 ### Path of the subdirectory in which the images are outputted 
+
     tex.ext     = ".tex"
 ### Tex file extesion. Any other value than ".tex" may not work 
+
 ){  #
     old.dir <- getwd() 
     #
@@ -88,23 +91,27 @@
 
 
 
-Sweave.wrapper <- function 
+Sweave.wrapper <- function(# Wrapper around Stangle, Sweave and tools::texi2dvi 
 ### Sweave.wrapper is a function that performs different 
 ### operations otherwise done step by step with Stangle, Sweave and 
 ### tools::texi2dvi, and that do a bit of cleaning in the folder 
 ### after that (delete images)
-    
-(   #
+
     file.name.root, 
 ### Root of the sweave (and tex) file name (without extention) 
+
     work.wd, 
 ### Path of the working directory 
+
     inout.dir, 
 ### Path of the subdirectory in which the images are outputted 
+
     sweave.ext  = ".Rnw", 
 ### Sweave file extesion. Any other value than ".Rnw" may not work 
+
     tex.ext     = ".tex"
 ### Tex file extesion. Any other value than ".tex" may not work 
+
 ){  #
     old.dir <- getwd() 
     #

Modified: pkg/soiltexture/DESCRIPTION
===================================================================
--- pkg/soiltexture/DESCRIPTION	2010-09-13 16:18:16 UTC (rev 41)
+++ pkg/soiltexture/DESCRIPTION	2010-09-22 13:54:40 UTC (rev 42)
@@ -1,6 +1,6 @@
 Package: soiltexture
 Version: 1.02
-Date: 2010-09-13
+Date: 2010-09-22
 Title: Functions for soil texture plot, classification and transformation
 Author: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.
 Maintainer: Julien MOEYS <jules_m78-soiltexture at yahoo.fr> 

Modified: pkg/soiltexture/R/soiltexture.R
===================================================================
--- pkg/soiltexture/R/soiltexture.R	2010-09-13 16:18:16 UTC (rev 41)
+++ pkg/soiltexture/R/soiltexture.R	2010-09-22 13:54:40 UTC (rev 42)
@@ -5716,6 +5716,11 @@
         tri.css.ps.lim  <- TT.data[["tri.css.ps.lim"]] 
     }   #
     #
+    if( any( is.null(base.css.ps.lim) ) )
+    {   #
+        base.css.ps.lim  <- tri.css.ps.lim 
+    }   #
+    #
     if( any( is.null(dat.css.ps.lim) ) )
     {   #
         dat.css.ps.lim  <- base.css.ps.lim  # Equal to tri.css.ps.lim, 
@@ -5748,7 +5753,7 @@
             tri.data        = tri.data,  
             base.css.ps.lim = base.css.ps.lim,  
             dat.css.ps.lim  = dat.css.ps.lim,  
-            css.names       = css.names,  
+            css.names       = css.names, 
             blr.tx          = blr.tx,  
             text.sum        = text.sum,  
             text.tol        = text.tol,  
@@ -5762,9 +5767,9 @@
             tri.data        = TT.data$"tt.points",  
             base.css.ps.lim = base.css.ps.lim,  
             dat.css.ps.lim  = tri.css.ps.lim,  
-            css.names       = css.names,  
+            css.names       = NULL, # TT.data$"tt.points" names are not necessarily identical to those in css.name
             blr.tx          = blr.tx,  
-            text.sum        = 1,  ###
+            text.sum        = 1, 
             text.tol        = text.tol,  
             tri.sum.tst     = tri.sum.tst,  
             tri.pos.tst     = tri.pos.tst,  

Modified: pkg/soiltexture/inst/doc/Rplots.pdf
===================================================================
--- pkg/soiltexture/inst/doc/Rplots.pdf	2010-09-13 16:18:16 UTC (rev 41)
+++ pkg/soiltexture/inst/doc/Rplots.pdf	2010-09-22 13:54:40 UTC (rev 42)
@@ -2,8 +2,8 @@
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Modified: pkg/soiltexture/inst/doc/soiltexture_vignette.pdf
===================================================================
--- pkg/soiltexture/inst/doc/soiltexture_vignette.pdf	2010-09-13 16:18:16 UTC (rev 41)
+++ pkg/soiltexture/inst/doc/soiltexture_vignette.pdf	2010-09-22 13:54:40 UTC (rev 42)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/soiltexture -r 42

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