[Seqinr-forum] problems with "Error in acnucopen(bank, socket) : Empty answer from server"

[Jean Lobry]

Hi Ken,

I'm not able to reproduce your problem:

 > library(seqinr)
 > choosebank("swissprot")

Here is my sessionInfo:

 > sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)

locale:
[1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods
[7] base

other attached packages:
[1] seqinr_3.1-3 ade4_1.6-2
 >

I don't see obvious differences so that I'm without clues.

Best,

JLO

Le 22/01/2015 19:41, Lo, Ken a écrit :
> Hi all,
>
> I am trying to use seqinr to retrieve some sequences from uniprot, but
> when I tried to use the function choosebank("swissprot"), I get the
> error message:
>
> Error in acnucopen(bank, socket) : Empty answer from server
>
> I checked that when I ping www.uniprot.org <http://www.uniprot.org>, I
> get an answer.
>
> I tried telneting to www.uniprot.org <http://www.uniprot.org> port 5558
> and it does not seem like it's replying at all.  Am I doing something
> wrong specifically?
>
> Also, my SessionInfo:
>
> R version 3.1.1 (2014-07-10)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] seqinr_3.1-3 ade4_1.6-2   bio3d_2.1-3
>
> loaded via a namespace (and not attached):
> [1] grid_3.1.1     parallel_3.1.1 tools_3.1.1
>
> Best,
>
> Ken
>
>
>
>
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