[Seqinr-forum] problems with "Error in acnucopen(bank, socket) : Empty answer from server"

Lo, Ken ken.lo at roche.com
Thu Jan 22 19:41:26 CET 2015


Hi all,

I am trying to use seqinr to retrieve some sequences from uniprot, but when
I tried to use the function choosebank("swissprot"), I get the error
message:

Error in acnucopen(bank, socket) : Empty answer from server

I checked that when I ping www.uniprot.org, I get an answer.

I tried telneting to www.uniprot.org port 5558 and it does not seem like
it's replying at all.  Am I doing something wrong specifically?

Also, my SessionInfo:

R version 3.1.1 (2014-07-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] seqinr_3.1-3 ade4_1.6-2   bio3d_2.1-3

loaded via a namespace (and not attached):
[1] grid_3.1.1     parallel_3.1.1 tools_3.1.1

Best,

Ken
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