[Seqinr-forum] release 2.0-4

[Jean lobry]

Dear seqinR,

seqinR 2.0-4 is on its way to CRAN. This is a minor release to
fix bugs in the readBinss() and readPanels() functions. There is
no need to upgrade if you are not using them.

Best,

Z.


release 2.0-4
-------------


o Configuration files to be imported by the readBins()
   function may have trailling tabulations, as for instance in the
   test file Prototype_PowerPlex_EP01_Bins.txt for allele
   9 at locus D3S1358 and for allele 14 at locus D12S391.
   This was a source of trouble during importation. This is now fixed
   and the above mentioned file is used as a quality control. A warning
   is now issued if the number of columns in the data.frame corresponding
   to a locus is not 4 as expected.

o Configuration files to be imported by the readPanels()
   function may have more than one tabulation separator between
   two data items in a way that could be different from one
   line to another one. There is an example of such a case in the
   test file Prototype_PowerPlex_EP01_Pa.txt where loci D10S1248 and
   D22S1045 are followed by a single tabulation when all remaining loci
   are followed by two tabulations. This was a source of trouble during
   importation. This is now fixed by preprocessing the input so that
   all consecutive tabulations are replaced by a single one.
   The above mentioned test file is now used as a quality control.

-- 
Jean R. Lobry            (lobry at biomserv.univ-lyon1.fr)
Laboratoire BBE-CNRS-UMR-5558, Univ. C. Bernard - LYON I,
43 Bd 11/11/1918, F-69622 VILLEURBANNE CEDEX, FRANCE
allo  : +33 472 43 27 56     fax    : +33 472 43 13 88
http://pbil.univ-lyon1.fr/members/lobry/