[Rsiena-help] RSiena: Error using multiple processors
Philippe Sulger
philippesulger at hotmail.com
Fri Sep 14 11:12:44 CEST 2012
Dear All (I've sent this already with another email-account, not
subscribed to the list)
I am running a siena07 analysis on 102 networks. I do this via a loop
and I am using a server with 16 cores. The command I enter is
for (i in c(1:102))
{ans.basicI[[i]] <- siena07(basic.modelI[[i]], data =
mydata.basic.model[[i]], effects = myeff.basic.modelI[[i]], batch = T,
nbrNodes = 14, useCluster = T);
sink(paste("basic.modelI.",i,".txt"));
show(ans.basicI[[i]])
sink()}
As you note, I decided for the time being to use only 14 cores. This
also gives me some txt-files with basic estimates. Also if I exclude the
sink()-txt-sink() part I receive the an error that looks as follows:
/Start phase 2.1//
//Phase 2 Subphase 1 Iteration 1 Progress: 4%//
//Phase 2 Subphase 1 Iteration 2 Progress: 4%//
//Error in checkForRemoteErrors(lapply(cl, recvResult)) : //
// 14 nodes produced errors; first error: Unlikely to terminate this
epoch: more than 1000000 steps//
//In addition: There were 16 warnings (use warnings() to see them)//
//> warnings()//
//Warning messages://
//1: closing unused connection 17 (<-localhost:10187)//
//2: closing unused connection 16 (<-localhost:10187)//
//3: closing unused connection 15 (<-localhost:10187)//
//4: closing unused connection 14 (<-localhost:10187)//
//5: closing unused connection 13 (<-localhost:10187)//
//6: closing unused connection 12 (<-localhost:10187)//
//7: closing unused connection 11 (<-localhost:10187)//
//8: closing unused connection 10 (<-localhost:10187)//
//9: closing unused connection 9 (<-localhost:10187)//
//10: closing unused connection 8 (<-localhost:10187)//
//11: closing unused connection 7 (<-localhost:10187)//
//12: closing unused connection 6 (<-localhost:10187)//
//13: closing unused connection 5 (<-localhost:10187)//
//14: closing unused connection 4 (<-localhost:10187)//
//15: In rbind(`1` = 2691L, `2` = integer(0), `3` = integer(0), ... ://
// number of columns of result is not a multiple of vector length (arg
25)//
//16: In rbind(`1` = integer(0), `2` = integer(0), `3` = integer(0),
... ://
// number of columns of result is not a multiple of vector length (arg 37)/
The loop works fine up to i=16.
Excerting the code on my Mac works fine...Do you have an idea what could
cause the problem?
Thank you for your help.
Best,
Philippe
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