[Rsiena-commits] r290 - in pkg: RSiena RSiena/R RSiena/data RSiena/inst/doc RSiena/man RSiena/src RSiena/src/data RSienaTest RSienaTest/R RSienaTest/data RSienaTest/doc RSienaTest/doc/sienacpp RSienaTest/inst RSienaTest/inst/doc RSienaTest/inst/unitTests RSienaTest/man RSienaTest/po RSienaTest/src RSienaTest/src/Eigen RSienaTest/src/data RSienaTest/src/estimator RSienaTest/src/estimator/components RSienaTest/src/estimator/derivative RSienaTest/src/estimator/listener RSienaTest/src/estimator/test RSienaTest/src/estimator/update RSienaTest/src/estimator/update/autocorrelation RSienaTest/src/estimator/update/step RSienaTest/src/estimator/update/step/normalization RSienaTest/src/lib RSienaTest/src/lib/Eigen RSienaTest/src/lib/Eigen/Eigen RSienaTest/src/lib/Eigen/Eigen/src RSienaTest/src/lib/Eigen/Eigen/src/Cholesky RSienaTest/src/lib/Eigen/Eigen/src/CholmodSupport RSienaTest/src/lib/Eigen/Eigen/src/Core RSienaTest/src/lib/Eigen/Eigen/src/Core/arch RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/AltiVec RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/Default RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/NEON RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE RSienaTest/src/lib/Eigen/Eigen/src/Core/products RSienaTest/src/lib/Eigen/Eigen/src/Core/util RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues RSienaTest/src/lib/Eigen/Eigen/src/Geometry RSienaTest/src/lib/Eigen/Eigen/src/Geometry/arch RSienaTest/src/lib/Eigen/Eigen/src/Householder RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers RSienaTest/src/lib/Eigen/Eigen/src/Jacobi RSienaTest/src/lib/Eigen/Eigen/src/LU RSienaTest/src/lib/Eigen/Eigen/src/LU/arch RSienaTest/src/lib/Eigen/Eigen/src/MetisSupport RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods RSienaTest/src/lib/Eigen/Eigen/src/PaStiXSupport RSienaTest/src/lib/Eigen/Eigen/src/PardisoSupport RSienaTest/src/lib/Eigen/Eigen/src/QR RSienaTest/src/lib/Eigen/Eigen/src/SPQRSupport RSienaTest/src/lib/Eigen/Eigen/src/SVD RSienaTest/src/lib/Eigen/Eigen/src/SparseCholesky RSienaTest/src/lib/Eigen/Eigen/src/SparseCore RSienaTest/src/lib/Eigen/Eigen/src/SparseLU RSienaTest/src/lib/Eigen/Eigen/src/SparseQR RSienaTest/src/lib/Eigen/Eigen/src/StlSupport RSienaTest/src/lib/Eigen/Eigen/src/SuperLUSupport RSienaTest/src/lib/Eigen/Eigen/src/UmfPackSupport RSienaTest/src/lib/Eigen/Eigen/src/misc RSienaTest/src/lib/Eigen/Eigen/src/plugins RSienaTest/src/lib/RNGStreams RSienaTest/src/logger RSienaTest/src/logger/appender RSienaTest/src/logger/filter RSienaTest/src/logger/formatter RSienaTest/src/model RSienaTest/src/model/effects RSienaTest/src/model/effects/generic RSienaTest/src/model/effects/gmm RSienaTest/src/model/settings RSienaTest/src/model/variables RSienaTest/src/network RSienaTest/src/network/iterators RSienaTest/src/network/layers RSienaTest/src/sim RSienaTest/src/sim/listener RSienaTest/src/sim/modificator RSienaTest/src/sim/mpi RSienaTest/src/utils RSienaTest/src/utils/debugging
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Feb 1 17:56:54 CET 2016
Author: tomsnijders
Date: 2016-02-01 17:56:52 +0100 (Mon, 01 Feb 2016)
New Revision: 290
Added:
pkg/RSiena/inst/doc/gwesp.png
pkg/RSiena/inst/doc/gwespCurves.png
pkg/RSienaTest/R/CInterface.r
pkg/RSienaTest/R/runit.r
pkg/RSienaTest/configure
pkg/RSienaTest/configure.ac
pkg/RSienaTest/configure.win
pkg/RSienaTest/doc/sienacpp/
pkg/RSienaTest/doc/sienacpp/aggregation.tikz
pkg/RSienaTest/doc/sienacpp/communication.pdf
pkg/RSienaTest/doc/sienacpp/dolby.tikz
pkg/RSienaTest/doc/sienacpp/error.pdf
pkg/RSienaTest/doc/sienacpp/estimation-vs-simulation.pdf
pkg/RSienaTest/doc/sienacpp/estimation.pdf
pkg/RSienaTest/doc/sienacpp/estimator.tikz
pkg/RSienaTest/doc/sienacpp/iterations.pdf
pkg/RSienaTest/doc/sienacpp/listener.tikz
pkg/RSienaTest/doc/sienacpp/listings.tex
pkg/RSienaTest/doc/sienacpp/parallel-schemes.tikz
pkg/RSienaTest/doc/sienacpp/simulation.tikz
pkg/RSienaTest/doc/sienacpp/talk.tex
pkg/RSienaTest/doc/sienacpp/theta.pdf
pkg/RSienaTest/doc/sienacpp/tikz.tex
pkg/RSienaTest/doc/sienacpp/tikzanimate.tex
pkg/RSienaTest/doc/sienacpp/tikzscale.tex
pkg/RSienaTest/inst/doc/gwesp.png
pkg/RSienaTest/inst/doc/gwespCurves.png
pkg/RSienaTest/inst/unitTests/
pkg/RSienaTest/inst/unitTests/asserts.R
pkg/RSienaTest/inst/unitTests/behaviorObjective.Rd
pkg/RSienaTest/inst/unitTests/covarNonSymmetricObjective.Rd
pkg/RSienaTest/inst/unitTests/covarSymmetricObjective.Rd
pkg/RSienaTest/inst/unitTests/effect.persistence.test.R
pkg/RSienaTest/inst/unitTests/model.persistence.test.R
pkg/RSienaTest/inst/unitTests/nonSymmetricObjective.Rd
pkg/RSienaTest/inst/unitTests/symmetricObjective.Rd
pkg/RSienaTest/man/CInterface.Rd
pkg/RSienaTest/src/Eigen/
pkg/RSienaTest/src/Eigen/RLegacy.cpp
pkg/RSienaTest/src/Eigen/RLegacy.h
pkg/RSienaTest/src/Eigen/Types.h
pkg/RSienaTest/src/Eigen/Util.h
pkg/RSienaTest/src/Makevars.in
pkg/RSienaTest/src/RInterface.cpp
pkg/RSienaTest/src/RInterface.h
pkg/RSienaTest/src/RUtil.cpp
pkg/RSienaTest/src/RUtil.h
pkg/RSienaTest/src/estimator/
pkg/RSienaTest/src/estimator/Controller.cpp
pkg/RSienaTest/src/estimator/Controller.h
pkg/RSienaTest/src/estimator/GMMEstimator.cpp
pkg/RSienaTest/src/estimator/GMMEstimator.h
pkg/RSienaTest/src/estimator/SienaFit.cpp
pkg/RSienaTest/src/estimator/SienaFit.h
pkg/RSienaTest/src/estimator/components/
pkg/RSienaTest/src/estimator/components/NSimCollector.cpp
pkg/RSienaTest/src/estimator/components/NSimCollector.h
pkg/RSienaTest/src/estimator/components/ParameterSum.cpp
pkg/RSienaTest/src/estimator/components/ParameterSum.h
pkg/RSienaTest/src/estimator/components/PeriodWiseScoreCollector.cpp
pkg/RSienaTest/src/estimator/components/PeriodWiseScoreCollector.h
pkg/RSienaTest/src/estimator/components/PeriodWiseStatisticsCollector.cpp
pkg/RSienaTest/src/estimator/components/PeriodWiseStatisticsCollector.h
pkg/RSienaTest/src/estimator/components/ScoreCollector.cpp
pkg/RSienaTest/src/estimator/components/ScoreCollector.h
pkg/RSienaTest/src/estimator/components/StatisticCollector.cpp
pkg/RSienaTest/src/estimator/components/StatisticCollector.h
pkg/RSienaTest/src/estimator/components/TimesCollector.cpp
pkg/RSienaTest/src/estimator/components/TimesCollector.h
pkg/RSienaTest/src/estimator/derivative/
pkg/RSienaTest/src/estimator/derivative/Differentiation.cpp
pkg/RSienaTest/src/estimator/derivative/Differentiation.h
pkg/RSienaTest/src/estimator/derivative/DifferentiationController.cpp
pkg/RSienaTest/src/estimator/derivative/DifferentiationController.h
pkg/RSienaTest/src/estimator/derivative/DifferentiationType.h
pkg/RSienaTest/src/estimator/derivative/FiniteDifference.cpp
pkg/RSienaTest/src/estimator/derivative/FiniteDifference.h
pkg/RSienaTest/src/estimator/derivative/MLDifferentiation.cpp
pkg/RSienaTest/src/estimator/derivative/MLDifferentiation.h
pkg/RSienaTest/src/estimator/derivative/ScoreDeviation.cpp
pkg/RSienaTest/src/estimator/derivative/ScoreDeviation.h
pkg/RSienaTest/src/estimator/listener/
pkg/RSienaTest/src/estimator/listener/EstimatorListener.cpp
pkg/RSienaTest/src/estimator/listener/EstimatorListener.h
pkg/RSienaTest/src/estimator/test/
pkg/RSienaTest/src/estimator/test/StaticController.cpp
pkg/RSienaTest/src/estimator/test/StaticController.h
pkg/RSienaTest/src/estimator/update/
pkg/RSienaTest/src/estimator/update/StopCondition.cpp
pkg/RSienaTest/src/estimator/update/StopCondition.h
pkg/RSienaTest/src/estimator/update/UpdateController.cpp
pkg/RSienaTest/src/estimator/update/UpdateController.h
pkg/RSienaTest/src/estimator/update/autocorrelation/
pkg/RSienaTest/src/estimator/update/autocorrelation/AutoCorrelator.cpp
pkg/RSienaTest/src/estimator/update/autocorrelation/AutoCorrelator.h
pkg/RSienaTest/src/estimator/update/autocorrelation/MaxACStopCondition.cpp
pkg/RSienaTest/src/estimator/update/autocorrelation/MaxACStopCondition.h
pkg/RSienaTest/src/estimator/update/autocorrelation/MinMaxACStopCondition.cpp
pkg/RSienaTest/src/estimator/update/autocorrelation/MinMaxACStopCondition.h
pkg/RSienaTest/src/estimator/update/step/
pkg/RSienaTest/src/estimator/update/step/GMMDiagonalStep.cpp
pkg/RSienaTest/src/estimator/update/step/GMMDiagonalStep.h
pkg/RSienaTest/src/estimator/update/step/GMMFullStep.cpp
pkg/RSienaTest/src/estimator/update/step/GMMFullStep.h
pkg/RSienaTest/src/estimator/update/step/UpdateStep.cpp
pkg/RSienaTest/src/estimator/update/step/UpdateStep.h
pkg/RSienaTest/src/estimator/update/step/normalization/
pkg/RSienaTest/src/estimator/update/step/normalization/SDStepNormalization.cpp
pkg/RSienaTest/src/estimator/update/step/normalization/SDStepNormalization.h
pkg/RSienaTest/src/estimator/update/step/normalization/StepNormalization.cpp
pkg/RSienaTest/src/estimator/update/step/normalization/StepNormalization.h
pkg/RSienaTest/src/lib/
pkg/RSienaTest/src/lib/Eigen/
pkg/RSienaTest/src/lib/Eigen/Eigen/
pkg/RSienaTest/src/lib/Eigen/Eigen/Array
pkg/RSienaTest/src/lib/Eigen/Eigen/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/Cholesky
pkg/RSienaTest/src/lib/Eigen/Eigen/CholmodSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/Core
pkg/RSienaTest/src/lib/Eigen/Eigen/Dense
pkg/RSienaTest/src/lib/Eigen/Eigen/Eigen
pkg/RSienaTest/src/lib/Eigen/Eigen/Eigen2Support
pkg/RSienaTest/src/lib/Eigen/Eigen/Eigenvalues
pkg/RSienaTest/src/lib/Eigen/Eigen/Geometry
pkg/RSienaTest/src/lib/Eigen/Eigen/Householder
pkg/RSienaTest/src/lib/Eigen/Eigen/IterativeLinearSolvers
pkg/RSienaTest/src/lib/Eigen/Eigen/Jacobi
pkg/RSienaTest/src/lib/Eigen/Eigen/LU
pkg/RSienaTest/src/lib/Eigen/Eigen/LeastSquares
pkg/RSienaTest/src/lib/Eigen/Eigen/MetisSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/OrderingMethods
pkg/RSienaTest/src/lib/Eigen/Eigen/PaStiXSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/PardisoSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/QR
pkg/RSienaTest/src/lib/Eigen/Eigen/QtAlignedMalloc
pkg/RSienaTest/src/lib/Eigen/Eigen/SPQRSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/SVD
pkg/RSienaTest/src/lib/Eigen/Eigen/Sparse
pkg/RSienaTest/src/lib/Eigen/Eigen/SparseCholesky
pkg/RSienaTest/src/lib/Eigen/Eigen/SparseCore
pkg/RSienaTest/src/lib/Eigen/Eigen/SparseLU
pkg/RSienaTest/src/lib/Eigen/Eigen/SparseQR
pkg/RSienaTest/src/lib/Eigen/Eigen/StdDeque
pkg/RSienaTest/src/lib/Eigen/Eigen/StdList
pkg/RSienaTest/src/lib/Eigen/Eigen/StdVector
pkg/RSienaTest/src/lib/Eigen/Eigen/SuperLUSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/UmfPackSupport
pkg/RSienaTest/src/lib/Eigen/Eigen/src/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Cholesky/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Cholesky/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Cholesky/LDLT.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Cholesky/LLT.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Cholesky/LLT_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/CholmodSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/CholmodSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/CholmodSupport/CholmodSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Array.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/ArrayBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/ArrayWrapper.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Assign.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Assign_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/BandMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Block.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/BooleanRedux.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CommaInitializer.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CoreIterators.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CwiseBinaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CwiseNullaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CwiseUnaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/CwiseUnaryView.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/DenseBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/DenseCoeffsBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/DenseStorage.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Diagonal.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/DiagonalMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/DiagonalProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Dot.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/EigenBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Flagged.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/ForceAlignedAccess.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Functors.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Fuzzy.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/GeneralProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/GenericPacketMath.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/GlobalFunctions.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/IO.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Map.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/MapBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/MathFunctions.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Matrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/MatrixBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/NestByValue.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/NoAlias.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/NumTraits.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/PermutationMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/PlainObjectBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/ProductBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Random.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Redux.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Ref.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Replicate.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/ReturnByValue.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Reverse.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Select.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/SelfAdjointView.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/SelfCwiseBinaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/SolveTriangular.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/StableNorm.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Stride.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Swap.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Transpose.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Transpositions.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/TriangularMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/VectorBlock.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/VectorwiseOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/Visitor.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/AltiVec/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/AltiVec/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/AltiVec/Complex.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/Default/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/Default/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/Default/Settings.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/NEON/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/NEON/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/NEON/Complex.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/NEON/PacketMath.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE/Complex.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE/MathFunctions.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/arch/SSE/PacketMath.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/CoeffBasedProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/Parallelizer.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/SelfadjointRank2Update.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularMatrixVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularSolverMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/products/TriangularSolverVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/BlasUtil.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/Constants.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/DisableStupidWarnings.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/ForwardDeclarations.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/MKL_support.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/Macros.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/Memory.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/Meta.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/NonMPL2.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/ReenableStupidWarnings.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/StaticAssert.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Core/util/XprHelper.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Block.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Cwise.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/CwiseOperators.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/All.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Quaternion.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/RotationBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Scaling.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Transform.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Geometry/Translation.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/LU.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Lazy.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/LeastSquares.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Macros.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/MathFunctions.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Memory.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Meta.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/Minor.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/QR.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/SVD.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/TriangularSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigen2Support/VectorBlock.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/ComplexSchur.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/EigenSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/RealQZ.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/RealSchur.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/RealSchur_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Eigenvalues/Tridiagonalization.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/AlignedBox.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/AngleAxis.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/EulerAngles.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Homogeneous.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Hyperplane.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/OrthoMethods.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/ParametrizedLine.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Quaternion.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Rotation2D.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/RotationBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Scaling.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Transform.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Translation.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/Umeyama.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/arch/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/arch/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Geometry/arch/Geometry_SSE.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Householder/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Householder/BlockHouseholder.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Householder/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Householder/Householder.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Householder/HouseholderSequence.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Jacobi/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Jacobi/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/Jacobi/Jacobi.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/Determinant.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/FullPivLU.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/Inverse.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/PartialPivLU.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/PartialPivLU_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/arch/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/arch/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/LU/arch/Inverse_SSE.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/MetisSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/MetisSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/MetisSupport/MetisSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods/Amd.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/OrderingMethods/Ordering.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PaStiXSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PaStiXSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PardisoSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PardisoSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/PardisoSupport/PardisoSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/ColPivHouseholderQR.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/ColPivHouseholderQR_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/FullPivHouseholderQR.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/HouseholderQR.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/QR/HouseholderQR_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SPQRSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SPQRSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SVD/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SVD/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SVD/JacobiSVD.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SVD/JacobiSVD_MKL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SVD/UpperBidiagonalization.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCholesky/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCholesky/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/AmbiVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/CompressedStorage.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/MappedSparseMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseBlock.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseColEtree.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseDenseProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseDot.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseFuzzy.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseMatrixBase.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparsePermutation.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseProduct.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseRedux.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseTranspose.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseTriangularView.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseUtil.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/SparseView.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseCore/TriangularSolver.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLUImpl.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_Memory.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_Structs.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_Utils.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_pivotL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_pruneL.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseQR/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseQR/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SparseQR/SparseQR.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/StdDeque.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/StdList.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/StdVector.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/StlSupport/details.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SuperLUSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SuperLUSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/UmfPackSupport/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/UmfPackSupport/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/Image.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/Kernel.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/Solve.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/SparseSolve.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/misc/blas.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/BlockMethods.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/CMakeLists.txt
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h
pkg/RSienaTest/src/lib/Eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h
pkg/RSienaTest/src/lib/RNGStreams/
pkg/RSienaTest/src/lib/RNGStreams/RngStream.cpp
pkg/RSienaTest/src/lib/RNGStreams/RngStream.h
pkg/RSienaTest/src/logger/
pkg/RSienaTest/src/logger/LogEntry.cpp
pkg/RSienaTest/src/logger/LogEntry.h
pkg/RSienaTest/src/logger/Logger.h
pkg/RSienaTest/src/logger/Priority.cpp
pkg/RSienaTest/src/logger/Priority.h
pkg/RSienaTest/src/logger/appender/
pkg/RSienaTest/src/logger/appender/Appender.h
pkg/RSienaTest/src/logger/appender/AppenderPool.cpp
pkg/RSienaTest/src/logger/appender/AppenderPool.h
pkg/RSienaTest/src/logger/appender/ConsoleAppender.h
pkg/RSienaTest/src/logger/appender/FileAppender.cpp
pkg/RSienaTest/src/logger/appender/FileAppender.h
pkg/RSienaTest/src/logger/appender/RConsoleAppender.h
pkg/RSienaTest/src/logger/filter/
pkg/RSienaTest/src/logger/filter/AndFilter.h
pkg/RSienaTest/src/logger/filter/Filter.h
pkg/RSienaTest/src/logger/filter/OpenMPThreadFilter.h
pkg/RSienaTest/src/logger/filter/PrefixFilter.h
pkg/RSienaTest/src/logger/filter/PriorityRangeFilter.h
pkg/RSienaTest/src/logger/formatter/
pkg/RSienaTest/src/logger/formatter/Formatter.h
pkg/RSienaTest/src/logger/formatter/MPIAwareFormatter.cpp
pkg/RSienaTest/src/logger/formatter/MPIAwareFormatter.h
pkg/RSienaTest/src/model/effects/CovariateSimmelianAlterEffect.cpp
pkg/RSienaTest/src/model/effects/CovariateSimmelianAlterEffect.h
pkg/RSienaTest/src/model/effects/gmm/
pkg/RSienaTest/src/model/effects/gmm/AgreementTransitivityEffect.h
pkg/RSienaTest/src/model/effects/gmm/RealTransitivityEffect.h
pkg/RSienaTest/src/model/effects/gmm/ReciprocityGMMEffect.h
pkg/RSienaTest/src/model/settings/
pkg/RSienaTest/src/model/settings/ComposableSetting.cpp
pkg/RSienaTest/src/model/settings/ComposableSetting.h
pkg/RSienaTest/src/model/settings/DyadicSetting.cpp
pkg/RSienaTest/src/model/settings/DyadicSetting.h
pkg/RSienaTest/src/model/settings/GeneralSetting.cpp
pkg/RSienaTest/src/model/settings/GeneralSetting.h
pkg/RSienaTest/src/model/settings/MeetingSetting.cpp
pkg/RSienaTest/src/model/settings/MeetingSetting.h
pkg/RSienaTest/src/model/settings/PrimarySetting.cpp
pkg/RSienaTest/src/model/settings/PrimarySetting.h
pkg/RSienaTest/src/model/settings/Setting.cpp
pkg/RSienaTest/src/model/settings/Setting.h
pkg/RSienaTest/src/model/settings/SettingInfo.cpp
pkg/RSienaTest/src/model/settings/SettingInfo.h
pkg/RSienaTest/src/model/settings/SettingsFactory.cpp
pkg/RSienaTest/src/model/settings/SettingsFactory.h
pkg/RSienaTest/src/model/settings/UniversalSetting.cpp
pkg/RSienaTest/src/model/settings/UniversalSetting.h
pkg/RSienaTest/src/network/Simmelian.cpp
pkg/RSienaTest/src/network/Simmelian.h
pkg/RSienaTest/src/network/iterators/AdvUnionTieIterator.cpp
pkg/RSienaTest/src/network/iterators/AdvUnionTieIterator.h
pkg/RSienaTest/src/network/iterators/FilteredIterator.h
pkg/RSienaTest/src/network/iterators/GeneralTieIterator.cpp
pkg/RSienaTest/src/network/iterators/GeneralTieIterator.h
pkg/RSienaTest/src/network/iterators/IntDoubleMapIterator.h
pkg/RSienaTest/src/network/iterators/IntVecIterator.h
pkg/RSienaTest/src/network/iterators/SingleIterator.h
pkg/RSienaTest/src/sim/
pkg/RSienaTest/src/sim/MetropolisHastingsSimulation.cpp
pkg/RSienaTest/src/sim/MetropolisHastingsSimulation.h
pkg/RSienaTest/src/sim/Simulation.cpp
pkg/RSienaTest/src/sim/Simulation.h
pkg/RSienaTest/src/sim/StatisticsSimulation.cpp
pkg/RSienaTest/src/sim/StatisticsSimulation.h
pkg/RSienaTest/src/sim/listener/
pkg/RSienaTest/src/sim/listener/Result.cpp
pkg/RSienaTest/src/sim/listener/Result.h
pkg/RSienaTest/src/sim/listener/ResultListener.cpp
pkg/RSienaTest/src/sim/listener/ResultListener.h
pkg/RSienaTest/src/sim/listener/ResultType.h
pkg/RSienaTest/src/sim/modificator/
pkg/RSienaTest/src/sim/modificator/DolbyModificator.cpp
pkg/RSienaTest/src/sim/modificator/DolbyModificator.h
pkg/RSienaTest/src/sim/modificator/MeanStatisticsCalculator.cpp
pkg/RSienaTest/src/sim/modificator/MeanStatisticsCalculator.h
pkg/RSienaTest/src/sim/modificator/ResultModificator.cpp
pkg/RSienaTest/src/sim/modificator/ResultModificator.h
pkg/RSienaTest/src/sim/mpi/
pkg/RSienaTest/src/sim/mpi/MPICommunicator.cpp
pkg/RSienaTest/src/sim/mpi/MPICommunicator.h
pkg/RSienaTest/src/sim/mpi/MPIStatisticsSimulation.cpp
pkg/RSienaTest/src/sim/mpi/MPIStatisticsSimulation.h
pkg/RSienaTest/src/utils/debugging/
pkg/RSienaTest/src/utils/debugging/ApproxSize.cpp
pkg/RSienaTest/src/utils/debugging/ApproxSize.h
pkg/RSienaTest/src/utils/debugging/StopWatch.cpp
pkg/RSienaTest/src/utils/debugging/StopWatch.h
Removed:
pkg/RSienaTest/src/Makevars
pkg/RSienaTest/src/Makevars.win
pkg/RSienaTest/src/network/iterators/CombinedTieIterator.cpp
pkg/RSienaTest/src/network/iterators/CombinedTieIterator.h
pkg/RSienaTest/src/network/iterators/IntersectionTieIterator.cpp
pkg/RSienaTest/src/network/iterators/IntersectionTieIterator.h
pkg/RSienaTest/src/network/iterators/SymDiffTieIterator.cpp
pkg/RSienaTest/src/network/iterators/SymDiffTieIterator.h
pkg/RSienaTest/src/network/iterators/UnionTieIterator.cpp
Modified:
pkg/RSiena/ChangeLog
pkg/RSiena/DESCRIPTION
pkg/RSiena/R/effects.r
pkg/RSiena/R/effectsMethods.r
pkg/RSiena/R/getActorStatistics.r
pkg/RSiena/R/initializeFRAN.r
pkg/RSiena/R/phase1.r
pkg/RSiena/R/phase2.r
pkg/RSiena/R/phase3.r
pkg/RSiena/R/robmon.r
pkg/RSiena/R/siena07.r
pkg/RSiena/R/sienaDataCreate.r
pkg/RSiena/R/sienaTimeTest.r
pkg/RSiena/R/sienaeffects.r
pkg/RSiena/R/sienaprint.r
pkg/RSiena/data/allEffects.csv
pkg/RSiena/inst/doc/RSiena.bib
pkg/RSiena/inst/doc/RSiena_Manual.pdf
pkg/RSiena/inst/doc/RSiena_Manual.tex
pkg/RSiena/man/RSiena-package.Rd
pkg/RSiena/man/includeEffects.Rd
pkg/RSiena/man/includeInteraction.Rd
pkg/RSiena/man/siena07.Rd
pkg/RSiena/man/sienaDataCreate.Rd
pkg/RSiena/man/sienaDependent.Rd
pkg/RSiena/man/sienaGOF.Rd
pkg/RSiena/man/sienaTimeTest.Rd
pkg/RSiena/src/data/Data.h
pkg/RSiena/src/siena07internals.cpp
pkg/RSienaTest/.Rbuildignore
pkg/RSienaTest/.Rinstignore
pkg/RSienaTest/ChangeLog
pkg/RSienaTest/DESCRIPTION
pkg/RSienaTest/NAMESPACE
pkg/RSienaTest/R/bayesTest.r
pkg/RSienaTest/R/effects.r
pkg/RSienaTest/R/effectsMethods.r
pkg/RSienaTest/R/initializeFRAN.r
pkg/RSienaTest/R/phase1.r
pkg/RSienaTest/R/phase3.r
pkg/RSienaTest/R/printDataReport.r
pkg/RSienaTest/R/robmon.r
pkg/RSienaTest/R/siena07.r
pkg/RSienaTest/R/sienaBayes.r
pkg/RSienaTest/R/sienaDataCreate.r
pkg/RSienaTest/R/sienaModelCreate.r
pkg/RSienaTest/R/sienaTimeTest.r
pkg/RSienaTest/R/sienaeffects.r
pkg/RSienaTest/R/sienaprint.r
pkg/RSienaTest/R/zzz.R
pkg/RSienaTest/cleanup
pkg/RSienaTest/cleanup.win
pkg/RSienaTest/data/allEffects.R
pkg/RSienaTest/data/allEffects.csv
pkg/RSienaTest/doc/Siena_algorithms.tex
pkg/RSienaTest/inst/doc/RSiena.bib
pkg/RSienaTest/inst/doc/RSiena_Manual.pdf
pkg/RSienaTest/inst/doc/RSiena_Manual.tex
pkg/RSienaTest/man/RSiena-package.Rd
pkg/RSienaTest/man/allEffects.Rd
pkg/RSienaTest/man/bayesTest.Rd
pkg/RSienaTest/man/extract.sienaBayes.Rd
pkg/RSienaTest/man/includeEffects.Rd
pkg/RSienaTest/man/includeInteraction.Rd
pkg/RSienaTest/man/siena07.Rd
pkg/RSienaTest/man/sienaAlgorithmCreate.Rd
pkg/RSienaTest/man/sienaBayes.Rd
pkg/RSienaTest/man/sienaDataCreate.Rd
pkg/RSienaTest/man/sienaDependent.Rd
pkg/RSienaTest/man/sienaGOF.Rd
pkg/RSienaTest/man/sienaTimeTest.Rd
pkg/RSienaTest/po/R-RSienaTest.pot
pkg/RSienaTest/src/data/NetworkLongitudinalData.cpp
pkg/RSienaTest/src/data/NetworkLongitudinalData.h
pkg/RSienaTest/src/model/EffectInfo.cpp
pkg/RSienaTest/src/model/EffectInfo.h
pkg/RSienaTest/src/model/EpochSimulation.cpp
pkg/RSienaTest/src/model/Model.cpp
pkg/RSienaTest/src/model/Model.h
pkg/RSienaTest/src/model/StatisticCalculator.cpp
pkg/RSienaTest/src/model/StatisticCalculator.h
pkg/RSienaTest/src/model/effects/CovariateDependentNetworkEffect.cpp
pkg/RSienaTest/src/model/effects/CovariateDependentNetworkEffect.h
pkg/RSienaTest/src/model/effects/CovariateEgoEffect.cpp
pkg/RSienaTest/src/model/effects/CovariateEgoEffect.h
pkg/RSienaTest/src/model/effects/CovariateSimilarityEffect.cpp
pkg/RSienaTest/src/model/effects/CovariateSimilarityEffect.h
pkg/RSienaTest/src/model/effects/DoubleDegreeBehaviorEffect.cpp
pkg/RSienaTest/src/model/effects/EffectFactory.cpp
pkg/RSienaTest/src/model/effects/EffectFactory.h
pkg/RSienaTest/src/model/effects/NetworkEffect.cpp
pkg/RSienaTest/src/model/effects/NetworkEffect.h
pkg/RSienaTest/src/model/effects/generic/GwespFunction.cpp
pkg/RSienaTest/src/model/variables/BehaviorVariable.cpp
pkg/RSienaTest/src/model/variables/DependentVariable.cpp
pkg/RSienaTest/src/model/variables/DependentVariable.h
pkg/RSienaTest/src/model/variables/NetworkVariable.cpp
pkg/RSienaTest/src/model/variables/NetworkVariable.h
pkg/RSienaTest/src/network/CommonNeighborIterator.cpp
pkg/RSienaTest/src/network/CommonNeighborIterator.h
pkg/RSienaTest/src/network/INetworkChangeListener.h
pkg/RSienaTest/src/network/IncidentTieIterator.cpp
pkg/RSienaTest/src/network/IncidentTieIterator.h
pkg/RSienaTest/src/network/Network.cpp
pkg/RSienaTest/src/network/Network.h
pkg/RSienaTest/src/network/OneModeNetwork.cpp
pkg/RSienaTest/src/network/iterators/ITieIterator.h
pkg/RSienaTest/src/network/iterators/UnionTieIterator.h
pkg/RSienaTest/src/network/layers/DistanceTwoLayer.cpp
pkg/RSienaTest/src/network/layers/DistanceTwoLayer.h
pkg/RSienaTest/src/network/layers/NetworkLayer.h
pkg/RSienaTest/src/siena07internals.cpp
pkg/RSienaTest/src/siena07setup.cpp
pkg/RSienaTest/src/siena07setup.h
pkg/RSienaTest/src/utils/Random.h
Log:
Modified: pkg/RSiena/ChangeLog
===================================================================
--- pkg/RSiena/ChangeLog 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/ChangeLog 2016-02-01 16:56:52 UTC (rev 290)
@@ -1,3 +1,30 @@
+2016-01-31 R-Forge Revision 290
+Changes in RSiena and RSienaTest:
+ * New effects FBDeg, FRDeg, BRDeg (RFDeg was mentioned earlier
+ but was not implemented; its place is now taken by FRDeg),
+ gwespFFMix, gwespBBMix, gwespBFMix, gwespFBMix, gwespRRMix,
+ gwespMix.
+ * Corrected check for positive derivative matrix at the end of phase 1
+ omitted for effects with fixed parameters
+ (phase1.r, CalculateDerivative(); phase3.r).
+ * Added parameters fix, test, parameter to includeInteraction().
+ * More helpful error message for incorrect nodesets in sienaDataCreate;
+ extended help pages sienaDataCreate.Rd and sienaDependent.Rd.
+ * Correction of diag(diag(..)) to allow estimation with p=1
+ (phase1.r, initializeFRAN.r)
+ * fromBayes bug corrected.
+Changes in RSienaTest:
+ * sienacpp added (programmed by Felix Schoenenberger); this includes
+ gmm estimation (Amati - Snijders);
+ and implies a lot of changes in other functions to enable this.
+ * settings model added (Snijders - Preciado; programmed by Mark Ortmann);
+ not yet documented. Also implies a lot of changes.
+ * sienaBayes(): option initML added; check for zero distances.
+ corrected function improveMH() in initialization;
+ check for dimensions priorMu and priorSigma done earlier.
+ * print.multipleBayesTest(): option descriptives added.
+ * glueBayes(): add p1 and p2 to created object.
+
2015-09-10 R-Forge Revision 289
Changes in RSiena and RSienaTest:
* New defaults for siena07() in sienaAlgorithmCreate():
Modified: pkg/RSiena/DESCRIPTION
===================================================================
--- pkg/RSiena/DESCRIPTION 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/DESCRIPTION 2016-02-01 16:56:52 UTC (rev 290)
@@ -1,9 +1,9 @@
Package: RSiena
Type: Package
Title: Siena - Simulation Investigation for Empirical Network Analysis
-Version: 1.1-289
-Date: 2015-09-10
-Author: Ruth Ripley, Krists Boitmanis, Tom A.B. Snijders
+Version: 1.1-290
+Date: 2016-01-31
+Author: Ruth Ripley, Krists Boitmanis, Tom A.B. Snijders, Felix Schoenenberger
Depends: R (>= 2.15.0), utils
Imports: Matrix, tcltk, lattice, parallel, MASS
Suggests: xtable, network, tools, codetools
Modified: pkg/RSiena/R/effects.r
===================================================================
--- pkg/RSiena/R/effects.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/effects.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -48,13 +48,21 @@
effects <- substituteNames(effects, xName, yName, zName)
effects$effectGroup <- NULL
nn <- nrow(effects)
- if (!all(is.na(effects$endowment)))
- {
- neweffects <- effects[rep(1:nn,
- times=(1 + 2 * as.numeric(effects$endowment))), ]
- neweffects$type <-
- unlist(lapply(effects$endowment, function(x) if (x)
- c('eval', 'endow', 'creation') else 'eval'))
+ # ignore the endowment field of 'gmm' type effects
+ effects$endowment[which(effects$type == 'gmm')] <- FALSE
+ # If we have some with a valid endowment field in the selection.
+ if (!all(is.na(effects$endowment))) {
+ # create a new vector with the right dimension
+ neweffects <- effects[rep(1:nn, times=(1 + 2 * as.numeric(effects$endowment))), ]
+ # fill with eval, endow and creation effects
+ neweffects$type <- unlist(by(effects, 1:nn,
+ function(e) {
+ if (e$endowment) {
+ c('eval', 'endow', 'creation')
+ } else {
+ e$type
+ }
+ }))
effects <- neweffects
nn <- nrow(effects)
}
@@ -88,16 +96,6 @@
tmp
}
-##@addSettingseffects internal getEffects add effects for settings model
-addSettingsEffects <- function(effects)
-{
-depvar <- attr(effects, "depvar")
- ## This processes the settings (constant dyadic covariate) structure.
- ## Only for one-mode network.
- nbrSettings <- length(attr(depvar,"settings"))
- ## This leads to a warning in R CMD Check.
- ## Not important since this is just a stub, to be developed later.
-}
##@networkRateEffects internal getEffects create a set of rate effects
networkRateEffects <- function(depvar, varname, symmetric, bipartite)
{
@@ -402,37 +400,6 @@
objEffects$type == 'eval', 'include'] <- TRUE
}
rateEffects$basicRate[1:observations] <- TRUE
- ## The following adding of settings effects should perhaps have been
- ## placed earlier; but for the moment it is here.
- ## This uses the results of addSettings
- ## which adds the settings to the sienaDependent object.
- if (!is.null(attr(depvar,"settings")))
- {
- ## add settings effects
- nbrSettings <- ifelse(attr(depvar,"settings") == "", 0,
- length(attr(depvar,"settings")))
- dupl <- rateEffects[1:observations, ]
- ## make extra copies
- newEffects <- dupl[rep(1:nrow(dupl), each = nbrSettings[i] + 2), ]
- newEffects <- split(newEffects,
- list(newEffects$group, newEffects$period))
- newEffects <- lapply(newEffects, function(dd)
- {
- dd$setting <- c("universal", "primary",
- names(attr(depvar,"settings")))
- i1 <- regexpr("rate", dd$effectName)
- dd$effectName <-
- paste(substr(dd$effectName, 1, i1 - 2),
- dd$setting, substring(dd$effectName, i1))
- dd
- })
- newEffects <- do.call(rbind, newEffects)
- ## add the extra column also to the other effects
- rateEffects$setting <- rep("", nrow(rateEffects))
- objEffects$setting <- rep("", nrow(objEffects))
- rateEffects <-
- rbind(newEffects, rateEffects[!rateEffects$basicRate, ])
- }
list(effects=rbind(rateEffects = rateEffects, objEffects = objEffects),
starts=starts)
}
Modified: pkg/RSiena/R/effectsMethods.r
===================================================================
--- pkg/RSiena/R/effectsMethods.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/effectsMethods.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -42,19 +42,21 @@
if (nrow(x) > 0)
{
nDependents <- length(unique(x$name))
- userSpecifieds <- x$shortName[x$include] %in% c("unspInt", "behUnspInt")
+ userSpecifieds <- x$shortName[x$include] %in%
+ c("unspInt", "behUnspInt")
endowments <- !x$type[x$include] %in% c("rate", "eval")
- # includes creations
+ # includes creations and gmm
+ gmm <- any(x$type[x$include] %in% "gmm")
timeDummies <- !x$timeDummy[x$include] == ","
- specs <- x[, c("name", "effectName", "include", "fix", "test",
- "initialValue", "parm")]
+ specs <- as.data.frame(x[, c("name", "effectName", "include", "fix",
+ "test", "initialValue", "parm")])
if (includeOnly)
{
specs <- specs[x$include, ]
}
if (nDependents == 1)
{
- specs <- specs[, -1]
+ specs <- specs[, -1] # drop name of dependent variable
}
if (any(endowments))
{
@@ -80,9 +82,30 @@
width=10)
if (nrow(specs) > 0)
{
+ if (gmm)
+ {
+ cat(' For estimation by the Generalized Method of Moments\n')
+ cat(' Effects\n')
+ if (any(specs$type!='gmm'))
+ {
+ specs1 <- specs[specs$type!='gmm',]
+ row.names(specs1) <- 1:nrow(specs1)
+ print(as.matrix(specs1), quote=FALSE)
+ }
+ if (any(specs$type=='gmm'))
+ {
+ cat('\n Statistics\n')
+ specs2 <- specs[specs$type=='gmm',]
+ row.names(specs2) <- 1:nrow(specs2)
+ print(as.matrix(specs2[,c(1:2,7)]), quote=FALSE)
+ }
+ }
+ else
+ {
row.names(specs) <- 1:nrow(specs)
print(as.matrix(specs), quote=FALSE)
}
+ }
else
{
print.data.frame(specs)
Modified: pkg/RSiena/R/getActorStatistics.r
===================================================================
--- pkg/RSiena/R/getActorStatistics.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/getActorStatistics.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -8,14 +8,7 @@
f <- unpackData(data,algorithm)
effects <- effects[effects$include,]
- if (!is.null(algorithm$settings))
- {
- effects <- addSettingsEffects(effects, algorithm)
- }
- else
- {
- effects$setting <- rep("", nrow(effects))
- }
+ effects$setting <- rep("", nrow(effects))
pData <- .Call('setupData', PACKAGE=pkgname,
list(as.integer(f$observations)),
list(f$nodeSets))
Modified: pkg/RSiena/R/initializeFRAN.r
===================================================================
--- pkg/RSiena/R/initializeFRAN.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/initializeFRAN.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -73,15 +73,15 @@
}
effects$initialValue <- defaultEffects$initialValue
}
- if (((inherits(data, "sienaGroup")) &&
+ if (((inherits(data, "sienaGroup")) &&
(!all(names(x$MaxDegree) %in% names(data[[1]]$depvars)))) ||
- ((!inherits(data, "sienaGroup")) &&
+ ((!inherits(data, "sienaGroup")) &&
(!all(names(x$MaxDegree) %in% names(data$depvars)))))
{
cat(' MaxDegree in the algorithm should be a named vector\n')
cat(' with only names of dependent variables in the data set.\n')
stop('Invalid algorithm-data combination.')
- }
+ }
## get data object into group format to save coping with two
## different formats
if (inherits(data, "sienaGroup"))
@@ -110,17 +110,11 @@
# If all works, this can be deleted,
# and also the function addSettingsEffects can be deleted.
# I used this function as a template for the change to getEffects.
-# I wonder why the next 8 lines cannot be dropped;
+# I wonder why the next line cannot be dropped;
# gives error message "cannot find setting col".
- if (!is.null(x$settings))
- {
- effects <- addSettingsEffects(effects, x)
- }
- else
- {
- effects$setting <- rep("", nrow(effects))
- }
- ## find any effects not included which are needed for interactions
+ effects$setting <- rep("", nrow(effects))
+
+ ## find any effects not included which are needed for interactions
tmpEffects <- effects[effects$include, ]
interactionNos <- unique(c(tmpEffects$effect1, tmpEffects$effect2,
tmpEffects$effect3))
@@ -236,6 +230,7 @@
z$theta[z$posj] <-
z$theta[z$posj] / requestedEffects$initialValue[z$condvar]
}
+ z$qq <- z$pp
## unpack data and put onto f anything we may need next time round.
f <- lapply(data, function(xx, x) unpackData(xx, x), x=x)
@@ -325,7 +320,7 @@
# Partial diagonalization of derivative matrix
# for use if 0 < x$diagonalize < 1.
temp <- (1-x$diagonalize)*z$dfra +
- x$diagonalize*diag(diag(z$dfra))
+ x$diagonalize*diag(diag(z$dfra), nrow=dim(z$dfra)[1])
temp[z$fixed, ] <- 0.0
temp[, z$fixed] <- 0.0
diag(temp)[z$fixed] <- 1.0
@@ -562,8 +557,8 @@
ans <- .Call("setupModelOptions", PACKAGE=pkgname,
pData, pModel, MAXDEGREE, CONDVAR, CONDTARGET,
profileData, z$parallelTesting, x$modelType, z$simpleRates)
-# Here came an error
-# Error: INTEGER() can only be applied to a 'integer', not a 'double'
+# Here came an error
+# Error: INTEGER() can only be applied to a 'integer', not a 'double'
if (x$maxlike)
{
if (!initC)
@@ -1674,17 +1669,14 @@
Behaviors <- data$depvars[types == "behavior"]
bipartites <- data$depvars[types == "bipartite"]
## add the settings
- oneModes <- lapply(oneModes, function(depvar)
- {
- name <- attr(depvar, "name")
- if (name %in% names(x$settings))
- {
- attr(depvar, "settings") <- c("universal", "primary",
- x$settings[[name]])
- }
- depvar
- }
- )
+ # oneModes <- lapply(oneModes, function(depvar) {
+ # name <- attr(depvar, "name")
+ # if (name %in% names(x$settings)) {
+ # # attr(depvar, "settings") <- c("universal", "primary", x$settings[[name]])
+ # attr(depvar, "settings") <- c(x$settings[[name]])
+ # }
+ # depvar
+ # })
f$nets <- lapply(oneModes, function(x, n, comp)
unpackOneMode(x, n, comp),
n = observations, comp=data$compositionChange)
@@ -1999,7 +1991,7 @@
{
stop("prevAns is not an RSiena fit object")
}
- prevEffects <- prevAns$requestedEffects
+ prevEffects <- prevAns$requestedEffects[which(prevAns$requestedEffects$type != 'gmm'),]
prevEffects$initialValue <- prevAns$theta
if (prevAns$cconditional)
{
@@ -2026,46 +2018,46 @@
}
##@addSettingseffects siena07 add extra rate effects for settings model
-addSettingsEffects <- function(effects, x)
-{
- ## need a list of settings (constant dyadic covariate name) for some or all
- ## dependent networks. If symmetric this is equivalent to a forcing model.
- ## The covariate actor sets should match the network actor sets.
- ## ?? would it ever make sense for bipartites? Allow it here for now and see!
- ## maybe better to add the settings pars to the data object but for now
- ## they are on the model with maxdegree. TODO write some validation
- varNames <- names(x$settings)
- nbrSettings <- sapply(x$settings, length)
- tmp <-
- lapply(1:length(x$settings), function(i)
- {
- ## find effects for this variable
- varEffects <- effects[effects$name == varNames[i], ]
- ## find relevant rate effects
- dupl <- varEffects[varEffects$basicRate, ]
- ## make extra copies
- newEffects <- dupl[rep(1:nrow(dupl),
- each = nbrSettings[i] + 2), ]
- newEffects <- split(newEffects, list(newEffects$group,
- newEffects$period))
- newEffects <- lapply(newEffects, function(dd)
- {
- dd$setting <- c("universal", "primary",
- x$settings[[i]])
- i1 <- regexpr("rate", dd$effectName)
- dd$effectName <-
- paste(substr(dd$effectName, 1, i1 - 2),
- dd$setting,
- substring(dd$effectName, i1))
- dd
- }
- )
- newEffects <- do.call(rbind, newEffects)
- ## add extra column to non basic rate effects
- varEffects$setting <- rep("", nrow(varEffects))
- ## combine them
- rbind(newEffects, varEffects[!varEffects$basicRate, ])
- })
- ## join them together again
- do.call(rbind, tmp)
-}
+# addSettingsEffects <- function(effects, x)
+# {
+# ## need a list of settings (constant dyadic covariate name) for some or all
+# ## dependent networks. If symmetric this is equivalent to a forcing model.
+# ## The covariate actor sets should match the network actor sets.
+# ## ?? would it ever make sense for bipartites? Allow it here for now and see!
+# ## maybe better to add the settings pars to the data object but for now
+# ## they are on the model with maxdegree. TODO write some validation
+# varNames <- names(x$settings)
+# nbrSettings <- sapply(x$settings, length)
+# tmp <-
+# lapply(1:length(x$settings), function(i)
+# {
+# ## find effects for this variable
+# varEffects <- effects[effects$name == varNames[i], ]
+# ## find relevant rate effects
+# dupl <- varEffects[varEffects$basicRate, ]
+# ## make extra copies
+# newEffects <- dupl[rep(1:nrow(dupl),
+# each = nbrSettings[i] + 2), ]
+# newEffects <- split(newEffects, list(newEffects$group,
+# newEffects$period))
+# newEffects <- lapply(newEffects, function(dd)
+# {
+# dd$setting <- c("universal", "primary",
+# x$settings[[i]])
+# i1 <- regexpr("rate", dd$effectName)
+# dd$effectName <-
+# paste(substr(dd$effectName, 1, i1 - 2),
+# dd$setting,
+# substring(dd$effectName, i1))
+# dd
+# }
+# )
+# newEffects <- do.call(rbind, newEffects)
+# ## add extra column to non basic rate effects
+# varEffects$setting <- rep("", nrow(varEffects))
+# ## combine them
+# rbind(newEffects, varEffects[!varEffects$basicRate, ])
+# })
+# ## join them together again
+# do.call(rbind, tmp)
+# }
Modified: pkg/RSiena/R/phase1.r
===================================================================
--- pkg/RSiena/R/phase1.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/phase1.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -224,7 +224,8 @@
}
# Partial diagonalization of derivative matrix
# for use if 0 < x$diagonalize < 1.
- temp <- (1-x$diagonalize)*z$dfra + x$diagonalize*diag(diag(z$dfra))
+ temp <- (1-x$diagonalize)*z$dfra +
+ x$diagonalize*diag(diag(z$dfra), nrow=dim(z$dfra)[1])
temp[z$fixed, ] <- 0.0
temp[, z$fixed] <- 0.0
diag(temp)[z$fixed] <- 1.0
@@ -301,8 +302,7 @@
##browser()
dfra <- derivativeFromScoresAndDeviations(z$ssc, z$sf2)
-
- fromBayes <- !is.null(x$fromBayes)
+ fromBayes <- 'fromBayes' %in% names(x)
z$jacobianwarn1 <- rep(FALSE, z$pp)
if ((any(diag(dfra)[!z$fixed] <= 0)) && (!fromBayes))
{
@@ -345,6 +345,7 @@
someFixed <- FALSE
if (any(diag(dfra) <= 0 & !z$fixed))
{
+ fromBayes <- 'fromBayes' %in% names(x)
if (fromBayes)
{
# Use the values for diag(dfra) from startupGlobal computed in sienaBayes
Modified: pkg/RSiena/R/phase2.r
===================================================================
--- pkg/RSiena/R/phase2.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/phase2.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -70,7 +70,7 @@
z
}
##@proc2subphase siena07 Do one subphase of phase 2
-proc2subphase <- function(z, x, subphase, ...)
+proc2subphase <- function(z, x, subphase, useAverage=TRUE, ...)
{
## init subphase of phase 2
z <- AnnouncePhase(z, x, subphase)
@@ -86,6 +86,10 @@
z$n2max <- z$n2maximum[subphase]
}
z$repeatsubphase <- 0
+ if (!useAverage)
+ {
+ z$thetaStore <- matrix(NA, z$n2max, z$pp)
+ }
repeat
{
z$repeatsubphase <- z$repeatsubphase + 1
Modified: pkg/RSiena/R/phase3.r
===================================================================
--- pkg/RSiena/R/phase3.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/phase3.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -295,7 +295,8 @@
sep="", collapse=" + ")
Report(thetext, outf)
Report('\n',outf)
- if (is.null(x$fromBayes))
+ fromBayes <- 'fromBayes' %in% names(x)
+ if (!fromBayes)
{
cat('*** Warning: Covariance matrix not positive definite *** \n')
cat('*** Standard errors not reliable ***\n')
Modified: pkg/RSiena/R/robmon.r
===================================================================
--- pkg/RSiena/R/robmon.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/robmon.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -345,6 +345,7 @@
diag(z$covtheta)[z$diver] <- NA # was 999
z$se <- sqrt(diag(z$covtheta))
}
+ z$gmm <- FALSE
z$termination <- 'OK'
z
}
Modified: pkg/RSiena/R/siena07.r
===================================================================
--- pkg/RSiena/R/siena07.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/siena07.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -5,8 +5,8 @@
## *
## * File: siena07.r
## *
-## * Description: This file contains the main controlling module for the model
-## * fitting
+## * Description: This file contains the main controlling module for the
+## * estimation.
## * Also contains utility functions used within siena07
## ****************************************************************************/
Modified: pkg/RSiena/R/sienaDataCreate.r
===================================================================
--- pkg/RSiena/R/sienaDataCreate.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/sienaDataCreate.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -220,7 +220,8 @@
sub <- match(nodeSetName, nodeSetNames)
if (is.na(sub))
{
- stop("node set not found")
+ warning(paste("node set",nodeSetName,"not found in",nodeSetNames,'\n'),
+ immediate. = TRUE)
}
n == length(nodeSets[[sub]])
}
Modified: pkg/RSiena/R/sienaTimeTest.r
===================================================================
--- pkg/RSiena/R/sienaTimeTest.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/sienaTimeTest.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -25,6 +25,13 @@
{
stop("User interrupted run, object possibly incomplete")
}
+ if (!is.null(sienaFit$gmm))
+ {
+ if (sienaFit$gmm)
+ {
+ stop("sienaTimeTest cannot be applied to results of GMoM estimation")
+ }
+ }
waveNumbers <- attr(sienaFit$f, "periodNos")
nWaves <- length(waveNumbers)
Modified: pkg/RSiena/R/sienaeffects.r
===================================================================
--- pkg/RSiena/R/sienaeffects.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/sienaeffects.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -71,6 +71,7 @@
includeInteraction <- function(myeff, ...,
include=TRUE, name=myeff$name[1],
type="eval", interaction1=rep("", 3), interaction2=rep("", 3),
+ fix=FALSE, test=FALSE, parameter=0,
character=FALSE, verbose=TRUE)
{
if (character)
@@ -159,9 +160,24 @@
{
effect3 <- 0
}
+ ## does the effect already exist?
+ intn <- (myeff$effect1 == effect1) & (myeff$effect2 == effect2)
+ if (effect3 > 0)
+ {
+ intn <- intn & (myeff$effect3 == effect3)
+ }
+ # intn indicates the rows of the effects object with this interaction
+ if (sum(intn) >= 2)
+ {
+ cat('The given effects object is corrupted:\n')
+ cat('It already contains more than one copy of this interaction.\n')
+ cat('Make a new effects object from scratch.\n')
+ stop('Corrupted effects object')
+ }
+
## if want to include, check that we have a spare row
- if (include)
- {
+ if ((include) && (sum(intn) == 0))
+ {# The interaction must be created
ints <- myeff[myeff$name == name & myeff$shortName %in%
c("unspInt", "behUnspInt") &
(is.na(myeff$effect1) | myeff$effect1 == 0)&
@@ -197,29 +213,31 @@
ints <- tmprow
}
ints <- ints[1, ]
+ intn <- myeff$effectNumber == ints$effectNumber
}
if (include)
{
- intn <- myeff$effectNumber == ints$effectNumber
myeff[intn, "include"] <- include
myeff[intn, c("effect1", "effect2", "effect3")] <-
c(effect1, effect2, effect3)
+ myeff[intn, "fix"] <- fix
+ myeff[intn, "test"] <- test
+ myeff[intn, "parm"] <- parameter
}
else
{
- intn <- (myeff$effect1 == effect1) & (myeff$effect2 == effect2)
- if (effect3 > 0)
+ if (sum(intn) == 0)
{
- intn <- intn & (myeff$effect3 == effect3)
+ warning('Note: there was no such interaction in this effects object.')
}
+ else
+ {
myeff[intn, "include"] <- FALSE
}
+ }
if (verbose)
{
- print.data.frame(myeff[intn, c("name", "shortName", "type",
- "interaction1", "interaction2",
- "include", "effect1", "effect2",
- "effect3")])
+ print(myeff[intn,])
}
myeff
}
Modified: pkg/RSiena/R/sienaprint.r
===================================================================
--- pkg/RSiena/R/sienaprint.r 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/R/sienaprint.r 2016-02-01 16:56:52 UTC (rev 290)
@@ -228,6 +228,17 @@
}
else
{
+ if (!is.null(x$gmm))
+ {
+ if (x$gmm)
+ {
+ cat("Estimated by Generalized Method of Moments\n\n")
+ }
+ }
+ if (x$maxlike)
+ {
+ cat("Estimated by Maximum Likelihood\n\n")
+ }
cat("Estimates, standard errors and convergence t-ratios\n\n")
}
tmp <- sienaFitThetaTable(x, tstat=tstat)
@@ -293,17 +304,29 @@
sem <- sqrt(dmsf/dim(x$sf)[1])
if (x$x$dolby)
{
- scores <- apply(x$ssc, c(1,3), sum) # x$nit by x$pp matrix
+ scores <- apply(x$ssc, c(1,3), sum) # x$nit by x$qq matrix
mean.scores <- colMeans(scores)
mean.stats <- mean.stats - (x$regrCoef * mean.scores)
sem <- sem*sqrt(1 - (x$regrCor)^2)
}
- mymess1 <- paste(format(1:x$pp,width=3), '. ',
- format(x$requestedEffects$functionName, width = 56),
+ if (!is.null(x$gmm))
+ {
+ if (x$gmm)
+ {
+ selection <- which(x$requestedEffects$type=='gmm' |
+ x$requestedEffects$type=='rate')
+ }
+ else
+ {
+ selection <- 1:nrow(x$requestedEffects)
+ }
+ }
+ mymess1 <- paste(format(1:x$qq,width=3), '. ',
+ format(x$requestedEffects$functionName[selection], width = 56),
format(round(mean.stats, 3), width=8, nsmall=3), ' ',
format(round(sqrt(dmsf), 3) ,width=8, nsmall=3), ' ',
format(round(sem, 4) ,width=8, nsmall=4),
- rep('\n',x$pp), sep='')
+ rep('\n',x$qq), sep='')
cat(as.matrix(mymess1),'\n', sep='')
}
else
@@ -312,6 +335,16 @@
sprintf("%8.4f", x$tconv.max), "\n\n"))
}
+
+ if (any(x$x$MaxDegree > 0)) {
+ cat(' Restrictions on degree in simulations: maximum degrees (0 = no restriction)')
+ cat('\n',x$x$MaxDegree,'\n\n')
+ }
+ if (any(x$x$UniversalOffset > 0)) {
+ cat(' Offsets for universal and meeting settings (if any): \n')
+ cat(x$x$UniversalOffset,'\n\n')
+ }
+
try(if (x$errorMessage.cov > '')
{cat('\nWarning:', x$errorMessage.cov, '\n')}, silent=TRUE)
# "Try" for downward compatibility
@@ -469,7 +502,17 @@
covcor[lower.tri(covcor)] <- correl[lower.tri(correl)]
printMatrix(format(round(t(covcor),digits=3),width=12))
cat("\nDerivative matrix of expected statistics X by parameters:\n\n")
+ if (!is.null(x$gmm))
+ {
+ if (x$gmm)
+ {
+ printMatrix(format(round(x$gamma,digits=3),width=12))
+ }
+ else
+ {
printMatrix(format(round(x$dfra,digits=3),width=12))
+ }
+ }
cat("\nCovariance matrix of X (correlations below diagonal):\n\n")
covcor <- x$msf
correl <- x$msf / sqrt(diag(x$msf))[row(x$msf)] /
@@ -681,6 +724,7 @@
else
{
theEffects <- x$requestedEffects
+ theEffects <-theEffects[which(theEffects$type!='gmm'),]
}
pp <- dim(theEffects)[1]
if (x$cconditional)
Modified: pkg/RSiena/data/allEffects.csv
===================================================================
--- pkg/RSiena/data/allEffects.csv 2015-09-10 19:43:31 UTC (rev 289)
+++ pkg/RSiena/data/allEffects.csv 2016-02-01 16:56:52 UTC (rev 290)
@@ -60,9 +60,12 @@
behaviorBipartiteObjective,xxxxxx tot. in-alt. av. dist. 2,xxxxxx tot. in-alt. av. dist. 2,totAInAltDist2,FALSE,yyyyyy,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
behaviorOneOneModeObjective,xxxxxx double outdegree,xxxxxx joint outdegree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
behaviorOneOneModeObjective,xxxxxx double indegree,xxxxxx joint indegree sum,BBDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
-behaviorOneModeSymObjective,xxxxxx double outdegree,xxxxxx joint outdegree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
-behaviorOneModeSymObjective,xxxxxx double rec.deg.,xxxxxx joint rec.deg. sum,RFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
-behaviorSymSymObjective,xxxxxx double degree,xxxxxx joint outdegree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorOneOneModeObjective,xxxxxx combined out-indegree,xxxxxx crossed out-indegree sum,FBDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorOneOneModeObjective,xxxxxx combined out-rec. degree,xxxxxx crossed out-rec.degree sum,FRDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorOneOneModeObjective,xxxxxx combined in-rec. degree,xxxxxx crossed in-rec.degree sum,BRDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorOneModeSymObjective,xxxxxx double outdegree,xxxxxx crossed out-degree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorOneModeSymObjective,xxxxxx double indegree,xxxxxx crossed in-degree sum,BFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
+behaviorSymSymObjective,xxxxxx double degree,xxxxxx joint degree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
behaviorBipBipObjective,xxxxxx double outdegree,xxxxxx joint outdegree sum,FFDeg,FALSE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
behaviorObjective,xxxxxx linear shape,xxxxxx centered sum,linear,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
behaviorObjective,xxxxxx quadratic shape,xxxxxx sum of cent. squares,quad,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
@@ -227,11 +230,11 @@
nonSymmetricObjective,number of actors at dist 2,Number of directed dists equal to 2,nbrDist2,FALSE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
nonSymmetricObjective,number pairs at doubly achieved dist 2,Number of doubly achieved dists 2,nbrDist2twice,FALSE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
nonSymmetricObjective,dense triads,Sum of triads with # or more ties,denseTriads,FALSE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,5,objective,NA,NA,0,0,0,0,,TRUE
-nonSymmetricObjective,GWESP I -> K -> J (#),Number of edgewise shared partners by two path (#),gwespFF,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricObjective,GWESP I <- K <- J (#),Number of edgewise shared partners by reverse two path (#),gwespBB,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricObjective,GWESP I <- K -> J (#),Number of edgewise shared partners by out two stars (#),gwespFB,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricObjective,GWESP I -> K <- J (#),Number of edgewise shared partners by in two stars (#),gwespBF,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricObjective,GWESP I <> K <> J (#),Number of edgewise shared partners both in AND out two stars (#),gwespRR,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricObjective,GWESP I -> K -> J (#),Numb. edgew. shrd prtns.by two path (#),gwespFF,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricObjective,GWESP I <- K <- J (#),Numb. edgew. shrd prtns.by reverse two path (#),gwespBB,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricObjective,GWESP I <- K -> J (#),Numb. edgew. shrd prtns.by out two stars (#),gwespFB,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricObjective,GWESP I -> K <- J (#),Numb. edgew. shrd prtns.by in two stars (#),gwespBF,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricObjective,GWESP I <> K <> J (#),Numb. edgew. shrd prtns. in AND out twostars (#),gwespRR,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
nonSymmetricObjective,shared popularity,(Number 2-2PU)^1/#),sharedPop,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
nonSymmetricObjective,indegree - popularity,Sum of squared indegrees,inPop,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
nonSymmetricObjective,indegree - popularity (sqrt),Sum of indegrees x sqrt(indegree),inPopSqrt,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
@@ -270,7 +273,7 @@
symmetricObjective,balance,Amount of balance,balance,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
symmetricObjective,number of actor pairs at dist 2,Number of dists equal to 2,nbrDist2,FALSE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
symmetricObjective,number pairs at doubly achieved dist 2,Number of doubly achieved dists 2,nbrDist2twice,FALSE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-symmetricObjective,GWESP (#),Number of edgewise shared partners (#),gwesp,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
+symmetricObjective,GWESP (#),Numb. edgew. shrd prtns.(#),gwesp,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
symmetricObjective,4-cycles,(Number 4-cycles)^1/#),cycle4ND,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
symmetricObjective,degree of alter,Sum of squared degrees,inPop,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/rsiena -r 290
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