[Rsiena-commits] r136 - in pkg: RSiena RSiena/R RSiena/inst/doc RSiena/man RSienaTest RSienaTest/R RSienaTest/doc RSienaTest/inst/doc RSienaTest/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Feb 21 01:54:45 CET 2011
Author: ripleyrm
Date: 2011-02-21 01:54:43 +0100 (Mon, 21 Feb 2011)
New Revision: 136
Modified:
pkg/RSiena/DESCRIPTION
pkg/RSiena/R/initializeFRAN.r
pkg/RSiena/R/siena01.r
pkg/RSiena/changeLog
pkg/RSiena/inst/doc/s_man400.pdf
pkg/RSiena/man/RSiena-package.Rd
pkg/RSienaTest/DESCRIPTION
pkg/RSienaTest/R/initializeFRAN.r
pkg/RSienaTest/R/siena01.r
pkg/RSienaTest/changeLog
pkg/RSienaTest/doc/s_man400.tex
pkg/RSienaTest/inst/doc/s_man400.pdf
pkg/RSienaTest/man/RSiena-package.Rd
Log:
Bug fix for bipartite networks. Minor bug fix in siena01Gui.
Modified: pkg/RSiena/DESCRIPTION
===================================================================
--- pkg/RSiena/DESCRIPTION 2011-02-05 22:00:48 UTC (rev 135)
+++ pkg/RSiena/DESCRIPTION 2011-02-21 00:54:43 UTC (rev 136)
@@ -1,8 +1,8 @@
Package: RSiena
Type: Package
Title: Siena - Simulation Investigation for Empirical Network Analysis
-Version: 1.0.12.135
-Date: 2011-02-05
+Version: 1.0.12.136
+Date: 2011-02-21
Author: Various
Depends: R (>= 2.9.0), xtable
Imports: Matrix
Modified: pkg/RSiena/R/initializeFRAN.r
===================================================================
--- pkg/RSiena/R/initializeFRAN.r 2011-02-05 22:00:48 UTC (rev 135)
+++ pkg/RSiena/R/initializeFRAN.r 2011-02-21 00:54:43 UTC (rev 136)
@@ -567,7 +567,7 @@
z
}
##@createEdgeLists siena07 Reformat data for C++
-createEdgeLists<- function(mat, matorig)
+createEdgeLists<- function(mat, matorig, bipartite)
{
## mat1 is basic values, with missings and structurals replaced
tmp <- lapply(1 : nrow(mat), function(x, y)
@@ -589,8 +589,11 @@
mymat
}, y = matorig)
mat2 <- do.call(rbind, tmp)
- ## remove the diagonal
- mat2 <- mat2[mat2[, 1] != mat2[, 2], , drop=FALSE]
+ ## remove the diagonal if not bipartite
+ if (!bipartite)
+ {
+ mat2 <- mat2[mat2[, 1] != mat2[, 2], , drop=FALSE]
+ }
## mat3 structurals
struct <- mat1[,3] %in% c(10, 11)
mat1[struct, 3] <- mat1[struct,3] - 10
@@ -602,8 +605,7 @@
storage.mode(mat2) <- 'integer'
storage.mode(mat3) <- 'integer'
## add attribute of size
- nodeSets <- attr(matorig, "nodeSet")
- if (length(nodeSets) > 1) ## bipartite
+ if (bipartite)
{
attr(mat1,'nActors') <- c(nrow(mat), ncol(mat))
attr(mat2,'nActors') <- c(nrow(mat), ncol(mat))
@@ -1001,7 +1003,7 @@
attr(depvar, 'downonly')[i] <- TRUE
}
diag(networks[[i]]) <- 0
- edgeLists[[i]] <- createEdgeLists(networks[[i]], depvar[, , i])
+ edgeLists[[i]] <- createEdgeLists(networks[[i]], depvar[, , i], FALSE)
}
}
## add attribute of nodeset
@@ -1326,8 +1328,7 @@
attr(depvar, 'downonly')[i] <- TRUE
}
- diag(networks[[i]]) <- 0
- edgeLists[[i]] <- createEdgeLists(networks[[i]], depvar[, , i])
+ edgeLists[[i]] <- createEdgeLists(networks[[i]], depvar[, , i], TRUE)
}
}
## add attribute of nodeset
Modified: pkg/RSiena/R/siena01.r
===================================================================
--- pkg/RSiena/R/siena01.r 2011-02-05 22:00:48 UTC (rev 135)
+++ pkg/RSiena/R/siena01.r 2011-02-21 00:54:43 UTC (rev 136)
@@ -811,7 +811,7 @@
tclvalue(derivVar) <<- '0. crude Monte Carlo'
}
tclvalue(ph3spinVar) <<- mymodel$n3
- if (mymodel$MaxDegree != 0)
+ if (any(mymodel$MaxDegree != 0))
{
for (i in 1:nMaxDegree)
{
Modified: pkg/RSiena/changeLog
===================================================================
--- pkg/RSiena/changeLog 2011-02-05 22:00:48 UTC (rev 135)
+++ pkg/RSiena/changeLog 2011-02-21 00:54:43 UTC (rev 136)
@@ -1,3 +1,8 @@
+2011-02-21 R-forge revision 136
+
+ * R/initializeFRAN.r: fix bug in bipartite networks: diagonals
+ were being zeroed.
+
2011-02-05 R-forge revision 135
* R/siena08.r: fix bug in summary method. Just layout, caused crash.
Modified: pkg/RSiena/inst/doc/s_man400.pdf
===================================================================
--- pkg/RSiena/inst/doc/s_man400.pdf 2011-02-05 22:00:48 UTC (rev 135)
+++ pkg/RSiena/inst/doc/s_man400.pdf 2011-02-21 00:54:43 UTC (rev 136)
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[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/rsiena -r 136
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