[Rsiena-commits] r169 - in pkg: RSiena RSiena/inst/doc RSiena/man RSienaTest RSienaTest/R RSienaTest/doc RSienaTest/inst/doc RSienaTest/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Aug 8 19:26:04 CEST 2011
Author: ripleyrm
Date: 2011-08-08 19:26:04 +0200 (Mon, 08 Aug 2011)
New Revision: 169
Modified:
pkg/RSiena/DESCRIPTION
pkg/RSiena/changeLog
pkg/RSiena/inst/doc/RSiena_Manual.pdf
pkg/RSiena/man/RSiena-package.Rd
pkg/RSienaTest/DESCRIPTION
pkg/RSienaTest/R/initializeFRAN.r
pkg/RSienaTest/changeLog
pkg/RSienaTest/doc/RSiena_Manual.tex
pkg/RSienaTest/inst/doc/RSiena_Manual.pdf
pkg/RSienaTest/man/RSiena-package.Rd
Log:
Fix for sienaTimeFix and name of updateTheta in initializeFRAN
Modified: pkg/RSiena/DESCRIPTION
===================================================================
--- pkg/RSiena/DESCRIPTION 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSiena/DESCRIPTION 2011-08-08 17:26:04 UTC (rev 169)
@@ -1,7 +1,7 @@
Package: RSiena
Type: Package
Title: Siena - Simulation Investigation for Empirical Network Analysis
-Version: 1.0.12.168
+Version: 1.0.12.169
Date: 2011-08-08
Author: Various
Depends: R (>= 2.10.0)
Modified: pkg/RSiena/changeLog
===================================================================
--- pkg/RSiena/changeLog 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSiena/changeLog 2011-08-08 17:26:04 UTC (rev 169)
@@ -1,3 +1,7 @@
+2011-08-09 R-forge revision 169 RSienaTest only
+
+ * R/initializeFRAN.r: bug fix to order of sienaTimeFix and prevans etc.
+
2011-08-08 R-forge revision 168 RSienaTest only.
* R/sienaprint.r: altered headings from 't-statistics for convergence'
Modified: pkg/RSiena/inst/doc/RSiena_Manual.pdf
===================================================================
--- pkg/RSiena/inst/doc/RSiena_Manual.pdf 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSiena/inst/doc/RSiena_Manual.pdf 2011-08-08 17:26:04 UTC (rev 169)
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%%EOF
Modified: pkg/RSiena/man/RSiena-package.Rd
===================================================================
--- pkg/RSiena/man/RSiena-package.Rd 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSiena/man/RSiena-package.Rd 2011-08-08 17:26:04 UTC (rev 169)
@@ -30,7 +30,7 @@
\tabular{ll}{
Package: \tab RSiena\cr
Type: \tab Package\cr
-Version: \tab 1.0.12.168\cr
+Version: \tab 1.0.12.169\cr
Date: \tab 2011-08-08\cr
License: \tab GPL-2 \cr
LazyLoad: \tab yes\cr
Modified: pkg/RSienaTest/DESCRIPTION
===================================================================
--- pkg/RSienaTest/DESCRIPTION 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSienaTest/DESCRIPTION 2011-08-08 17:26:04 UTC (rev 169)
@@ -1,7 +1,7 @@
Package: RSienaTest
Type: Package
Title: Siena - Simulation Investigation for Empirical Network Analysis
-Version: 1.0.12.168
+Version: 1.0.12.169
Date: 2011-08-08
Author: Various
Depends: R (>= 2.10.0)
Modified: pkg/RSienaTest/R/initializeFRAN.r
===================================================================
--- pkg/RSienaTest/R/initializeFRAN.r 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSienaTest/R/initializeFRAN.r 2011-08-08 17:26:04 UTC (rev 169)
@@ -69,17 +69,6 @@
}
effects$initialValue <- defaultEffects$initialValue
}
- ## add any effects needed for time dummies
- tmp <- sienaTimeFix(effects, data)
- data <- tmp$data
- effects <- tmp$effects
- if (!x$useStdInits)
- {
- if (!is.null(prevAns) && inherits(prevAns, "sienaFit"))
- {
- effects <- updateThetas(effects, prevAns)
- }
- }
## get data object into group format to save coping with two
## different formats
if (inherits(data, 'sienaGroup'))
@@ -91,6 +80,17 @@
nGroup <- 1
data <- sienaGroupCreate(list(data), singleOK=TRUE)
}
+ ## add any effects needed for time dummies
+ tmp <- sienaTimeFix(effects, data)
+ data <- tmp$data
+ effects <- tmp$effects
+ if (!x$useStdInits)
+ {
+ if (!is.null(prevAns) && inherits(prevAns, "sienaFit"))
+ {
+ effects <- updateTheta(effects, prevAns)
+ }
+ }
## find any effects not included which are needed for interactions
tmpEffects <- effects[effects$include, ]
interactionNos <- unique(c(tmpEffects$effect1, tmpEffects$effect2,
Modified: pkg/RSienaTest/changeLog
===================================================================
--- pkg/RSienaTest/changeLog 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSienaTest/changeLog 2011-08-08 17:26:04 UTC (rev 169)
@@ -1,3 +1,7 @@
+2011-08-09 R-forge revision 169 RSienaTest only
+
+ * R/initializeFRAN.r: bug fix to order of sienaTimeFix and prevans etc.
+
2011-08-08 R-forge revision 168 RSienaTest only.
* R/sienaprint.r: altered headings from 't-statistics for convergence'
Modified: pkg/RSienaTest/doc/RSiena_Manual.tex
===================================================================
--- pkg/RSienaTest/doc/RSiena_Manual.tex 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSienaTest/doc/RSiena_Manual.tex 2011-08-08 17:26:04 UTC (rev 169)
@@ -9254,7 +9254,7 @@
repository.)
\begin{small}
\begin{itemize}
-\item 2011-08-08 RSienaTest only
+\item 2011-08-08 RSienaTest only R-forge revision 168/9
\begin{itemize}
\item More work on maximum likelihood.
\item When using finite difference derivative estimation or maxmimum likelihood
@@ -9271,7 +9271,7 @@
\item New function \sfn{bayes} is now fully available with a help page and no
need to use RSiena::: when calling it.
\end{itemize}
-\item 2011-08-02
+\item 2011-08-03 R-forge revision 167
\begin{itemize}
\item Fix another display of manual in siena01Gui
\item Added network names to relevant behavior effects if there is more than one
@@ -9280,7 +9280,7 @@
\item Renamed avSimX, totSimX, avAltX to avSimEgoX, totSimEgoX, avAltEgoX
\item Trapped error caused by omitting Actors node set when specifying others.
\end{itemize}
-\item 2011-07-27
+\item 2011-07-27 R-forge revision 164:
\begin{itemize}
\item
Include quadratic shape effect by default unless range is less than 2.
@@ -9288,10 +9288,10 @@
Shorten behavior interaction effectnames by removing the repeated variable name.
\item Fix bug when displaying manual from siena01Gui.
\end{itemize}
-\item 2011-07-23
+\item 2011-07-23 R-forge revision 163:
Fix bug in effectsDocumentation, reduce memory size needed for non-ML,
non-finite-difference models.
-\item 2011-07-02
+\item 2011-07-02 R-forge revision 161:
\begin{itemize}
\item Fix problem with bayes routine with single data object only.
\item Fix problems with getRSienaRDocumentation: internal functions within
Modified: pkg/RSienaTest/inst/doc/RSiena_Manual.pdf
===================================================================
--- pkg/RSienaTest/inst/doc/RSiena_Manual.pdf 2011-08-08 16:50:47 UTC (rev 168)
+++ pkg/RSienaTest/inst/doc/RSiena_Manual.pdf 2011-08-08 17:26:04 UTC (rev 169)
@@ -4923,29 +4923,22 @@
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