[Rsiena-commits] r124 - in pkg: RSiena RSiena/R RSiena/inst/doc RSiena/man RSiena/src RSienaTest RSienaTest/R RSienaTest/doc RSienaTest/inst/doc RSienaTest/man RSienaTest/src

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Oct 22 23:43:08 CEST 2010 

Author: ripleyrm
Date: 2010-10-22 23:43:03 +0200 (Fri, 22 Oct 2010)
New Revision: 124

Removed:
   pkg/RSiena/configure.win
   pkg/RSiena/src/win32/
   pkg/RSienaTest/configure.win
   pkg/RSienaTest/src/win32/
Modified:
   pkg/RSiena/DESCRIPTION
   pkg/RSiena/R/siena01.r
   pkg/RSiena/R/sienaTimeTest.r
   pkg/RSiena/changeLog
   pkg/RSiena/inst/doc/s_man400.pdf
   pkg/RSiena/man/RSiena-package.Rd
   pkg/RSiena/man/installGui.Rd
   pkg/RSienaTest/DESCRIPTION
   pkg/RSienaTest/R/siena01.r
   pkg/RSienaTest/R/sienaTimeTest.r
   pkg/RSienaTest/changeLog
   pkg/RSienaTest/doc/classdesign.tex
   pkg/RSienaTest/doc/s_man400.tex
   pkg/RSienaTest/inst/doc/s_man400.pdf
   pkg/RSienaTest/man/RSiena-package.Rd
   pkg/RSienaTest/man/installGui.Rd
Log:
Fix for sienatimeTest with one effect. Removed standalone Siena gui. Updated documentation

Modified: pkg/RSiena/DESCRIPTION
===================================================================
--- pkg/RSiena/DESCRIPTION	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/DESCRIPTION	2010-10-22 21:43:03 UTC (rev 124)
@@ -1,8 +1,8 @@
 Package: RSiena
 Type: Package
 Title: Siena - Simulation Investigation for Empirical Network Analysis
-Version: 1.0.11.123
-Date: 2010-10-13
+Version: 1.0.11.124
+Date: 2010-10-22
 Author: Various
 Depends: R (>= 2.9.0), xtable
 Imports: Matrix

Modified: pkg/RSiena/R/siena01.r
===================================================================
--- pkg/RSiena/R/siena01.r	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/R/siena01.r	2010-10-22 21:43:03 UTC (rev 124)
@@ -13,12 +13,10 @@
 {
     if (.Platform$OS.type =="windows")
     {
-        tmp <- list.files(pkgpath)
-        if (subs <- grep("sienaguisetup", tmp))
-        {
-            filename=paste(pkgpath, "/", tmp[subs], sep="", collapse="")
-            system(filename)
-        }
+        message("The standalone gui is no longer available. ",
+                "To run the gui within R:\n",
+                "Start R, load RSiena using Packages menu ",
+                "then type siena01Gui() (and <ENTER>)")
     }
     else
     {

Modified: pkg/RSiena/R/sienaTimeTest.r
===================================================================
--- pkg/RSiena/R/sienaTimeTest.r	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/R/sienaTimeTest.r	2010-10-22 21:43:03 UTC (rev 124)
@@ -63,7 +63,7 @@
 	## intuitively expected. For now, I just check the dimensionality of the scores,
 	## as it will match the number of included "effects" on dimension 3 if uncond.
 	## estimation was used.
-	if (dim(sienaFit$sf2[,,-escreen])[3] == dim(sienaFit$effects[,,-escreen])[1]) {
+	if (dim(sienaFit$sf2[,,-escreen, drop=FALSE])[3] == dim(sienaFit$effects)[1]) {
 		rscreen <- indRateEffects
 	} else {
 		rscreen <- 99999
@@ -121,16 +121,17 @@
 	## obsStats, moment, scores are the crucial ingredients from sienaFit which
 	## screen for the base effects and make the rest of the code clean
 	obsStats <- t(sienaFit$targets2[-c(dscreen,rscreen,escreen), ])
-	moment <- sienaFit$sf2[, , -c(dscreen,rscreen,escreen)] - rep(obsStats, each=nSims)
-	scores <- sienaFit$ssc[ , , -c(dscreen,rscreen,escreen)]
+	moment <- sienaFit$sf2[, , -c(dscreen,rscreen,escreen), drop=FALSE] -
+        rep(obsStats, each=nSims)
+	scores <- sienaFit$ssc[ , , -c(dscreen,rscreen,escreen), drop=FALSE]
 	## Because the sienaFit object does not have a strict class definition,
 	## the $sf2 and $targets2 arrays cannot be expected to always have the
 	## proper format. The best we can do is therefore to die gracefully if
 	## the arrays do not line up:
 	G <- array(0, dim=c(nSims, observations - 1, nEffects + nDummies))
 	SF <- array(0, dim=c(nSims, observations - 1, nEffects + nDummies))
-	if (sum(dim(G[, , 1:nEffects]) != dim(moment))+
-		sum(dim(SF[, , 1:nEffects]) != dim(scores))>0) {
+	if (sum(dim(G[, , 1:nEffects, drop=FALSE]) != dim(moment))+
+		sum(dim(SF[, , 1:nEffects, drop=FALSE]) != dim(scores))>0) {
 		stop("The moments and scores in your sienaFit have unexpected dimensions.\n
 			It is possible that your model specifications are not yet implemented\n
 			in sienaTimeTest. Please contact the developers.\n\nDid you include
@@ -641,7 +642,7 @@
 						dvind <- which(names(data$cCovars) ==
 							effects$interaction1[effects$effectNumber==i])
 						if ( length(dvind) == 0) {
-						## It is a varCovar, not a coCovar 
+						## It is a varCovar, not a coCovar
 							dvind <- which(names(data$vCovars) ==
 											effects$interaction1[effects$effectNumber==i])
 							if (length(dvind)==0) {

Modified: pkg/RSiena/changeLog
===================================================================
--- pkg/RSiena/changeLog	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/changeLog	2010-10-22 21:43:03 UTC (rev 124)
@@ -1,3 +1,11 @@
+2010-10-22 R-forge revision 124
+
+	* R/sienaTimeTest.r: fix bug causing error when only one effect
+	(added multiple drop=FALSE)
+	* src/win32/(all), configure.win, R/siena01.r: removed siena.exe,
+	install function now gives a message.
+	* doc/classdesign.tex (RSienaTest only) updated documentation
+
 2010-10-13 R-forge revision 123 RSienaTest only
 
 	* doc/RSienaDeveloper.tex: added details about change logs etc

Deleted: pkg/RSiena/configure.win
===================================================================
--- pkg/RSiena/configure.win	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/configure.win	2010-10-22 21:43:03 UTC (rev 124)
@@ -1,16 +0,0 @@
-#!/bin/sh
-
-if test "$R_ARCH" != "/x64";  then
-echo "  getting gui installer"
-allok=yes
-echo 'download.file("http://www.stats.ox.ac.uk/~ruth/sienaversion.txt",
-"inst/sienaversion.txt", mode="w")'| ${R_HOME}/bin/R --vanilla --slave
-
-if [ ! -e inst/sienaversion.txt ]; then
-	allok=no
-else
-	echo '{version <- scan("inst/sienaversion.txt", what="character"); file1 <- paste("sienaguisetup", version, ".exe", sep="", collapse=""); file2 <- paste("http://www.stats.ox.ac.uk/~ruth/", file1, sep="", collapse=""); file3 <- paste("inst/",file1, sep="", collapse="");download.file(file2,file3,mode="wb")}' | ${R_HOME}/bin/R --vanilla  --slave
-fi
-fi
-
-exit 0

Modified: pkg/RSiena/inst/doc/s_man400.pdf
===================================================================
--- pkg/RSiena/inst/doc/s_man400.pdf	2010-10-13 19:55:33 UTC (rev 123)
+++ pkg/RSiena/inst/doc/s_man400.pdf	2010-10-22 21:43:03 UTC (rev 124)
@@ -34,7 +34,7 @@
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/rsiena -r 124

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