[Rsiena-commits] r51 - in pkg/RSiena: . R data inst/doc src src/win32
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Feb 4 18:21:08 CET 2010
Author: ripleyrm
Date: 2010-02-04 18:21:07 +0100 (Thu, 04 Feb 2010)
New Revision: 51
Modified:
pkg/RSiena/R/effects.r
pkg/RSiena/changeLog
pkg/RSiena/configure.win
pkg/RSiena/data/allEffects.csv
pkg/RSiena/inst/doc/s_man400.pdf
pkg/RSiena/src/Makefile.win
pkg/RSiena/src/Makevars
pkg/RSiena/src/win32/Makefile
Log:
1) Minor bug fixes to effects.
2) Changes to makefiles for Win64.
Modified: pkg/RSiena/R/effects.r
===================================================================
--- pkg/RSiena/R/effects.r 2010-02-01 21:05:42 UTC (rev 50)
+++ pkg/RSiena/R/effects.r 2010-02-04 17:21:07 UTC (rev 51)
@@ -259,7 +259,6 @@
## get starting values
starts <- getNetworkStartingVals(depvar)
-
##set defaults
rateEffects[1:noPeriods, "include"] <- TRUE
rateEffects[1:noPeriods, "initialValue"] <- starts$startRate
@@ -268,18 +267,18 @@
objEffects$untrimmedValue <- rep(0, nrow(objEffects))
if (attr(depvar,'symmetric'))
{
- objEffects[objEffects$effectName == "degree (density)" &
+ objEffects[objEffects$shortName == "density" &
objEffects$type == "eval",
c('include', "initialValue", "untrimmedValue")] <-
list(TRUE, starts$degree, starts$untrimmed)
- objEffects[objEffects$effectName=='transitive triads' &
+ objEffects[objEffects$shortName=='transTriads' &
objEffects$type=='eval','include'] <- TRUE
}
else
{
if (!(attr(depvar,'allUpOnly') || attr(depvar, 'allDownOnly')))
{
- objEffects[objEffects$effectName =='outdegree (density)'&
+ objEffects[objEffects$shortName == "density" &
objEffects$type == 'eval',
c('include', "initialValue", "untrimmedValue")] <-
list(TRUE, starts$degree, starts$untrimmed)
@@ -289,8 +288,8 @@
objEffects <-
objEffects[!objEffects$shortName == "density", ]
}
- objEffects[objEffects$effectName == 'reciprocity'&
- objEffects$type == 'eval','include'] <- TRUE
+ objEffects[objEffects$shortName == 'recip'&
+ objEffects$type == 'eval', 'include'] <- TRUE
}
rateEffects$basicRate[1:observations] <- TRUE
list(effects=rbind(rateEffects = rateEffects, objEffects = objEffects),
@@ -442,7 +441,7 @@
objEffects <- createEffects("bipartiteObjective", varname)
- for (j in seq(along = xx$dycCovars))
+ for (j in seq(along = xx$dycCovars))
{
if (all(nodeSets == attr(xx$dycCovars[[j]], 'nodeSet')))
{
@@ -464,7 +463,7 @@
{
covNodeset <- match(attr(xx$cCovars[[j]], "nodeSet"),
nodeSets)
- if (covNodeset > 0)
+ if (!is.na(covNodeset))
{
tmp <- covarBipartiteEff(names(xx$cCovars)[j],
attr(xx$cCovars[[j]],
@@ -482,7 +481,7 @@
{
covNodeset <- match(attr(xx$depvars[[j]], "nodeSet"),
nodeSets)
- if (covNodeset > 0)
+ if (!is.na(covNodeset))
{
tmp <- covarBipartiteEff(names(xx$depvars)[j],
poszvar=TRUE,
@@ -498,7 +497,7 @@
{
covNodeset <- match(attr(xx$vCovars[[j]], "nodeSet"),
nodeSets)
- if (covNodeset > 0)
+ if (!is.na(covNodeset))
{
tmp <- covarBipartiteEff(names(xx$vCovars)[j],
attr(xx$vCovars[[j]],
@@ -574,7 +573,7 @@
if (!(attr(depvar,'allUpOnly') || attr(depvar, 'allDownOnly')))
{
- objEffects[objEffects$effectName =='outdegree (density)' &
+ objEffects[objEffects$shortName =='density' &
objEffects$type == 'eval',
c('include', 'initialValue', 'untrimmedValue')] <-
list(TRUE, starts$degree, starts$untrimmed)
@@ -633,6 +632,7 @@
##@covarBipartiteEff internal getEffects
covarBipartiteEff<- function(covarname, poszvar, moreThan2, nodesetNbr)
{
+ covRateEffects <- NULL
if (nodesetNbr == 1)
{
covObjEffects <-
@@ -927,8 +927,8 @@
attr(effects[[eff]], "starts")$prec <- prec
if (attr(depvar, 'symmetric'))
{
- effects[[eff]][effects[[eff]]$effectName ==
- 'degree (density)' &
+ effects[[eff]][effects[[eff]]$shortName ==
+ 'density' &
effects[[eff]]$type == 'eval',
c('initialValue','untrimmedValue')] <-
list(degree, untrimmed)
@@ -937,8 +937,8 @@
{
if (!(attr(x,'anyUpOnly') || attr(x, 'anyDownOnly')))
{
- effects[[eff]][effects[[eff]]$effectName ==
- 'outdegree (density)' &
+ effects[[eff]][effects[[eff]]$shortName ==
+ 'density' &
effects[[eff]]$type == 'eval',
c('initialValue',
"untrimmedValue")] <-
@@ -980,8 +980,8 @@
attr(effects[[eff]], "starts")$prec <- prec
if (!(attr(x,'anyUpOnly') || attr(x, 'anyDownOnly')))
{
- effects[[eff]][effects[[eff]]$effectName ==
- 'outdegree (density)' &
+ effects[[eff]][effects[[eff]]$shortName ==
+ 'density' &
effects[[eff]]$type == 'eval',
c('initialValue',
"untrimmedValue")] <-
Modified: pkg/RSiena/changeLog
===================================================================
--- pkg/RSiena/changeLog 2010-02-01 21:05:42 UTC (rev 50)
+++ pkg/RSiena/changeLog 2010-02-04 17:21:07 UTC (rev 51)
@@ -1,3 +1,11 @@
+2010-02-04 R-forge revision 51
+
+ * data/allEffects/csv: Bug in covariate behavior effects
+ * configure.win, src/Makefile.win, src/Makevars, src/win32/Makefile:
+ changes for Win64
+ * r/effects.r: minor fixes to getEffects function (default effects
+ for multiple dependent networks.)
+
2010-01-28 R-forge revision 48
* R/simstatsc.r: fixed bug in sort order of effects
Modified: pkg/RSiena/configure.win
===================================================================
--- pkg/RSiena/configure.win 2010-02-01 21:05:42 UTC (rev 50)
+++ pkg/RSiena/configure.win 2010-02-04 17:21:07 UTC (rev 51)
@@ -1,5 +1,6 @@
#!/bin/sh
+if test "$R_ARCH" != "/x64"; then
echo " getting gui installer"
allok=yes
echo 'download.file("http://www.stats.ox.ac.uk/~ruth/sienaversion.txt",
@@ -10,5 +11,6 @@
else
echo '{version <- scan("inst/sienaversion.txt", what="character"); file1 <- paste("sienaguisetup", version, ".exe", sep="", collapse=""); file2 <- paste("http://www.stats.ox.ac.uk/~ruth/", file1, sep="", collapse=""); file3 <- paste("inst/",file1, sep="", collapse="");download.file(file2,file3,mode="wb")}' | ${R_HOME}/bin/R --vanilla --slave
fi
+fi
exit 0
Modified: pkg/RSiena/data/allEffects.csv
===================================================================
--- pkg/RSiena/data/allEffects.csv 2010-02-01 21:05:42 UTC (rev 50)
+++ pkg/RSiena/data/allEffects.csv 2010-02-04 17:21:07 UTC (rev 51)
@@ -85,7 +85,7 @@
covarBehaviorInteractions,av.sim. x ,av.sim. x ,avSimX,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0,
covarBehaviorInteractions,tot. sim. x ,tot. sim. x ,totSimX,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0,
covarBehaviorInteractions,av. alters x ,av. alters x ,avAltX,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0,
-covarBehaviorRate,effect yyyyyy on rate xxxxxx,Amount of change on xxxxxx x yyyyyy,RateX,NA,yyyyyy,,rate,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,rate,NA,NA,0,0,0,0,
+covarBehaviorRate,effect yyyyyy on rate xxxxxx,Amount of change on xxxxxx x yyyyyy,RateX,NA,yyyyyy,,rate,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,rate,NA,covariate,0,0,0,0,
bipartiteObjective,outdegree (density),Number of ties,density,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0,dyadic
bipartiteObjective,4-cycles,(Number 4-cycles)^1/#),4-cycles,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,1,objective,NA,NA,0,0,0,0,
bipartiteObjective,indegree - popularity,Sum of squared indegrees,inPop,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0,
@@ -166,7 +166,6 @@
bipartiteSymmetricObjective,xxxxxx to agreement,"mixed triplets XWW, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0
nonSymmetricBipartiteObjective,outdegree^(1/#) xxxxxx activity,sum outd. x degree^(1/#) xxxxxx,outActIntn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,2,objective,NA,NA,0,0,0,0
nonSymmetricBipartiteObjective,from xxxxxx agreement ,"mixed triplets XWW, W = xxxxxx",from,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0
-nonSymmetricBipartiteObjective,from xxxxxx mutual agr. ,"mixed triplets XWW, W=m.xxxxxx",fromMutual,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0
bipartiteBipartiteObjective,outdegree^(1/#) xxxxxx activity,sum outd. x degree^(1/#) xxxxxx,outActIntn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,2,objective,NA,NA,0,0,0,0
bipartiteBipartiteObjective,xxxxxx to agreement,"mixed triplets XWW, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0
covarNetNetObjective,from xxxxxx agr. x same yyyyyy,"m.tr. XWW, W = xxxxxx, same yyyyyy",covNetNet,TRUE,xxxxxx,yyyyyy,eval,FALSE,FALSE,FALSE,FALSE,FALSE,0,0,objective,NA,NA,0,0,0,0
Modified: pkg/RSiena/inst/doc/s_man400.pdf
===================================================================
--- pkg/RSiena/inst/doc/s_man400.pdf 2010-02-01 21:05:42 UTC (rev 50)
+++ pkg/RSiena/inst/doc/s_man400.pdf 2010-02-04 17:21:07 UTC (rev 51)
@@ -1,509 +1,506 @@
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[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/rsiena -r 51
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