[Rcpp-devel] Can not install Rcpp on Mac OS X 10.9.5

[Steve Lianoglou]

Following the instructions here worked for me:

http://www.thecoatlessprofessor.com/programming/rcpp-rcpparmadillo-and-os-x-mavericks-lgfortran-and-lquadmath-error

Although the instructions have a slight typo in them, and probably should read:

  curl -O http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2
  sudo tar fvxz gfortran-4.8.2-darwin13.tar.bz2 -C /

I should note that I was having different problems than what you
report, though, but try that.

Which version of R did you install, btw? I'm assuming you've got a
binary 3.2-mavericks binary from CRAN (and not compiled your own).

HTH,
-steve


On Sat, May 2, 2015 at 6:43 PM, Peng Yu <pengyu.ut at gmail.com> wrote:
> Hi,
>
> I having been trying to install Rcpp on Mac OS X 10.9.5 from
> source. But I got the following error. Do you know how to fix this
> problem?
>
>
>   There is a binary version available but the source version is later:
>      binary source needs_compilation
> Rcpp 0.11.5 0.11.6              TRUE
>
> installing the source package 'Rcpp'
>
> trying URL 'http://cran.r-project.org/src/contrib/Rcpp_0.11.6.tar.gz'
> Content type 'application/x-gzip' length 2352221 bytes (2.2 MB)
> ==================================================
> downloaded 2.2 MB
>
> * installing *source* package 'Rcpp' ...
> ** package 'Rcpp' successfully unpacked and MD5 sums checked
> ** libs
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Date.cpp -o
> Date.o
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Module.cpp
> -o Module.o
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c
> Rcpp_init.cpp -o Rcpp_init.o
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c api.cpp -o
> api.o
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c
> attributes.cpp -o attributes.o
> g++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I../inst/include/ -I/usr/local/include -I/usr/local/include/freetype2
> -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c barrier.cpp
> -o barrier.o
> g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress
> -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
> Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o
> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> installing to /Users/py/Library/R/3.2/library/Rcpp/libs
> ** R
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/Users/py/Library/R/3.2/library/Rcpp/libs/Rcpp.so':
>   dlopen(/Users/py/Library/R/3.2/library/Rcpp/libs/Rcpp.so, 6): Symbol
> not found: __ZNSoD0Ev
>   Referenced from: /Users/py/Library/R/3.2/library/Rcpp/libs/Rcpp.so
>   Expected in: flat namespace
>  in /Users/py/Library/R/3.2/library/Rcpp/libs/Rcpp.so
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing '/Users/py/Library/R/3.2/library/Rcpp'
> * restoring previous '/Users/py/Library/R/3.2/library/Rcpp'
>
> The downloaded source packages are in
> '/private/var/folders/nn/p4t2bp0n0znc79dc77q45y9m0000gn/T/RtmpCaaP7K/downloaded_packages'
> Warning message:
> In install.packages("Rcpp", lib = r_libs_user_dir, repos =
> "http://cran.r-project.org",  :
>   installation of package 'Rcpp' had non-zero exit status
>
> --
> Regards,
> Peng
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-- 
Steve Lianoglou
Computational Biologist
Genentech