[Rcpp-devel] using [[Rcpp::interfaces(r, cpp)]] causes a package to fail
Søren Højsgaard
sorenh at math.aau.dk
Sun Feb 16 23:39:23 CET 2014
Thanks for the info. Learning to work with github is - alas - still on my todo-list. I tried
> install_github("Rcpp")
Installing github repo Rcpp/master from hadley
Downloading Rcpp.zip from https://github.com/hadley/Rcpp/archive/master.zip
Installing package from c:\temp\RtmpwLANoa/Rcpp.zip
Installing Rcpp
"C:/programs/R/current/bin/x64/R" --vanilla CMD build \
"c:\temp\RtmpwLANoa\devtoolse9c47705010\Rcpp-master" --no-manual --no-resave-data
* checking for file 'c:\temp\RtmpwLANoa\devtoolse9c47705010\Rcpp-master/DESCRIPTION' ... OK
* preparing 'Rcpp':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* creating vignettes ...Warning: running command '"C:/programs/R/current/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Error in loadVignetteBuilder(vigns$pkgdir) :
vignette builder 'highlight' not found
Calls: <Anonymous> -> loadVignetteBuilder
In addition: Warning message:
In tools::buildVignettes(dir = ".", tangle = TRUE) :
Files named as vignettes but with no recognized vignette engine:
'vignettes/Rcpp-FAQ.Rnw'
'vignettes/Rcpp-attributes.Rnw'
'vignettes/Rcpp-extending.Rnw'
'vignettes/Rcpp-modules.Rnw'
'vignettes/Rcpp-package.Rnw'
'vignettes/Rcpp-quickref.Rnw'
'vignettes/Rcpp-sugar.Rnw'
(Is a VignetteBuilder field missing?)
Execution halted
Error: Command failed (1)
Any insights on what I should do?
When will this "bugfix" propagate to CRAN (I need to update a package!).
All the best
Søren
From: jj at rstudio.com [mailto:jj at rstudio.com] On Behalf Of JJ Allaire
Sent: 16. februar 2014 21:54
To: Søren Højsgaard
Cc: rcpp-devel at lists.r-forge.r-project.org (rcpp-devel at r-forge.wu-wien.ac.at)
Subject: Re: [Rcpp-devel] using [[Rcpp::interfaces(r, cpp)]] causes a package to fail
That's a bug! (introduced when we were adding support for checking user interrupts from Rcpp code). Now fixed on master: https://github.com/RcppCore/Rcpp/commit/c356c701d79773ba35113872bb6e32d66804f362
On Sat, Feb 15, 2014 at 1:16 AM, Søren Højsgaard <sorenh at math.aau.dk<mailto:sorenh at math.aau.dk>> wrote:
Dear all
If in a package I have
// [[Rcpp::interfaces(r, cpp)]]
in all .cpp files then things work.
However, if in a .cpp file I have
// [[Rcpp::interfaces(r, cpp)]]
then compilation fails with the message:
* checking whether package 'mypack' can be installed ...Warning: running command '"C:/programs/R/current/bin/x64/Rcmd.exe" INSTALL -l "c:/Documents/stat/Rdevel/gmwR-DEVEL/gRbaseDEVEL/c-code/c-code-gRbase/array-ops-2014/mypack.Rcheck" --no-html "c:\DOCUME~2\stat\Rdevel\GMWR-D~1\GRBASE~1\c-code\C-CODE~1\ARRAY-~1\MYPACK~1.RCH\00_PKG~1\mypack"' had status 1 ERROR Installation failed.
See 'c:/Documents/stat/Rdevel/gmwR-DEVEL/gRbaseDEVEL/c-code/c-code-gRbase/array-ops-2014/mypack.Rcheck/00install.out
The 00install.out says
* installing *source* package 'mypack' ...
** libs
*** arch - i386
g++ -m32 -I"C:/programs/R/current/include" -DNDEBUG -I../inst/include/ -I"C:/programs/R/current/library/Rcpp/include" -I"C:/programs/R/current/library/RcppEigen/include" -I"C:/programs/R/current/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
RcppExports.cpp: In function 'SEXPREC* mypack_cell2entry_cpp(SEXP, SEXP)':
RcppExports.cpp:37:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_cell2entry2_cpp(SEXP, SEXP)':
RcppExports.cpp:72:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCell_cpp(SEXP, SEXP)':
RcppExports.cpp:107:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCellSlicePrim_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:143:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCellSlice_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:179:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_slice2entry_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:215:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_getCellNumberPrim_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:251:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_getCellNumber_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:287:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_permuteCellEntries_cpp(SEXP, SEXP)':
RcppExports.cpp:322:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
make: *** [RcppExports.o] Error 1
Warning: running command 'make -f "Makevars.win" -f "C:/programs/R/current/etc/i386/Makeconf" -f "C:/programs/R/current/share/make/winshlib.mk<http://winshlib.mk>" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="mypack.dll" OBJECTS="RcppExports.o array-ops14-prim.o rcppeigen_hello_world.o spdinv-arma.o utils-all-subsets.o"' had status 2
g++ -m32 -I"C:/programs/R/current/include" -DNDEBUG -I../inst/include/ -I"C:/programs/R/current/library/Rcpp/include" -I"C:/programs/R/current/library/RcppEigen/include" -I"C:/programs/R/current/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
RcppExports.cpp: In function 'SEXPREC* mypack_cell2entry_cpp(SEXP, SEXP)':
RcppExports.cpp:37:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_cell2entry2_cpp(SEXP, SEXP)':
RcppExports.cpp:72:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCell_cpp(SEXP, SEXP)':
RcppExports.cpp:107:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCellSlicePrim_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:143:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_nextCellSlice_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:179:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_slice2entry_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:215:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_getCellNumberPrim_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:251:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_getCellNumber_cpp(SEXP, SEXP, SEXP)':
RcppExports.cpp:287:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
RcppExports.cpp: In function 'SEXPREC* mypack_permuteCellEntries_cpp(SEXP, SEXP)':
RcppExports.cpp:322:9: error: 'jumpToTop' is not a member of 'Rcpp::internal'
make: *** [RcppExports.o] Error 1
Warning: running command 'make -f "Makevars.win" -f "C:/programs/R/current/etc/i386/Makeconf" -f "C:/programs/R/current/share/make/winshlib.mk<http://winshlib.mk>" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="mypack.dll" OBJECTS="RcppExports.o array-ops14-prim.o rcppeigen_hello_world.o spdinv-arma.o utils-all-subsets.o" symbols.rds' had status 2
ERROR: compilation failed for package 'mypack'
* removing 'c:/Documents/stat/Rdevel/gmwR-DEVEL/gRbaseDEVEL/c-code/c-code-gRbase/array-ops-2014/mypack.Rcheck/mypack'
I have this sessionInfo()
> sessionInfo()
R version 3.0.2 Patched (2014-02-12 r64985)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Danish_Denmark.1252 LC_CTYPE=Danish_Denmark.1252 LC_MONETARY=Danish_Denmark.1252
[4] LC_NUMERIC=C LC_TIME=Danish_Denmark.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Rcpp_0.11.0 devtools_1.4.1 shTools_1.0 markdown_0.6.4 knitr_1.5
loaded via a namespace (and not attached):
[1] compiler_3.0.2 digest_0.6.4 evaluate_0.5.1 formatR_0.10
[5] grid_3.0.2 httr_0.2 lattice_0.20-24 Matrix_1.1-2
[9] memoise_0.1 parallel_3.0.2 RcppArmadillo_0.4.000.2 RcppEigen_0.3.2.0.2
[13] RCurl_1.95-4.1 stringr_0.6.2 tools_3.0.2 whisker_0.3-2
Any thoughts on what is going on?
Cheers
Søren
--------------------------------------------------
Dr. Søren Højsgaard, Head of Department
Department of Mathematical Sciences
Aalborg University
Fredrik Bajers Vej 7 G
DK-9220 Aalborg Ø
--------------------------------------------------
Phone +45 9940 8801; cell phone +45 2485 5748
Secretary: phone +45 9940 8800; Fax: +45 9815 8129
Homepage: people.math.aau.dk/~sorenh<http://people.math.aau.dk/~sorenh>
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