[Rcpp-devel] Package built with Rcpp fails to install

Kevin Ushey kevinushey at gmail.com
Mon Feb 3 20:51:00 CET 2014 

Hi Tal,

Just to confirm -- have you updated to Rcpp 0.11.0? I imagine you are
still using 0.10.6, and hence this is why you don't see the error we /
CRAN did. Perhaps when you tested in Winbuilder it was still using the
old Rcpp as well, since the new release is still rolling out.

-Kevin

On Mon, Feb 3, 2014 at 11:45 AM, Romain Francois
<romain at r-enthusiasts.com> wrote:
> Le 3 févr. 2014 à 20:35, Tal Galili <tal.galili at gmail.com> a écrit :
>
> Dear all,
>
> Dirk -
> I have now re-checked, and the package loads fine on my machine, and it is
> completely synced with github.
> The only files in my gitignore are:
> .Rproj.user
> .Rhistory
> .RData
> src/*.o
> src/*.so
> src/*.dll
> So I suspect that the versions are indeed the same.
>
> Kevin - thanks.
>
> Romain -
> I am glad you have an idea for what the problem might be. However, I am not
> sure I understand how to proceed in fixing it.
>
>
> Since the package is very minimalistic, any specific examples on what can be
> improved would be of great help.
>
>
> My message was more or less aimee at kevin who volunteered to help you. I
> juqt wanted to give him some context. I'm sure kevin will be able to make
> sense of why i said.
>
> Otherwise i'll have a look, but not this week.
>
> Cheers,
>
> Romain
>
>
>
> Thanks everyone,
> Tal
>
>
>
>
>
>
> ----------------Contact
> Details:-------------------------------------------------------
> Contact me: Tal.Galili at gmail.com |
> Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) |
> www.r-statistics.com (English)
> ----------------------------------------------------------------------------------------------
>
>
>
> On Mon, Feb 3, 2014 at 9:12 PM, Romain Francois <romain at r-enthusiasts.com>
> wrote:
>>
>> The problem is likely to be that it was assumed that List derives from
>> RObject.
>>
>> It used to, it does not anymore.
>>
>> Classes from the api now use a policy based design. See andrei
>> alexandrescu's modern c++ book for the why and the how of policy based
>> design.
>>
>> .
>>
>> Envoyé de mon iPhone
>>
>> Le 3 févr. 2014 à 20:01, Kevin Ushey <kevinushey at gmail.com> a écrit :
>>
>> > Hi Tal,
>> >
>> > I get the same error with the new CRAN Rcpp, 0.11.0. I'll try to take
>> > a look later.
>> >
>> > -Kevin
>> >
>> > On Mon, Feb 3, 2014 at 10:32 AM, Tal Galili <tal.galili at gmail.com>
>> > wrote:
>> >> Dear Rcpp people,
>> >>
>> >> I am trying to get a new package to CRAN called {dendextendRcpp}. Here
>> >> is
>> >> the repos:
>> >> https://github.com/talgalili/dendextendRcpp
>> >>
>> >> (note that this package relies on the {dendextend} which has just been
>> >> released to CRAN today :) )
>> >>
>> >>
>> >> The package loads fine for me (on R-devel, with Windows 7), however
>> >> Kurt
>> >> Hornik (CRAN maintainer) could not get the package to load on Linux.
>> >> Following is the error massage that he got. Any input (either here or
>> >> on the
>> >> git repo) will be most appreciated.
>> >>
>> >> With regards,
>> >> Tal
>> >>
>> >> ========================
>> >>
>> >> (p.s: I suspect this might be because I use .hpp files in src. Should I
>> >> use
>> >> something else?)
>> >>
>> >>
>> >>
>> >> * installing *source* package 'dendextendRcpp' ...
>> >> ** libs
>> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
>> >> -I/usr/local/include
>> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
>> >> -fpic  -g
>> >> -O3 -Wall -Wno-unused -pedantic -c RcppExports.cpp -o RcppExports.o
>> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
>> >> -I/usr/local/include
>> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
>> >> -fpic  -g
>> >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
>> >> cut_lower.cpp:35:7: error: no matching function for call to
>> >> 'get_height'
>> >>  if(get_height(tree) <= height) {
>> >>     ^~~~~~~~~~
>> >> ./get_branches_heights.hpp:29:8: note: candidate function not viable:
>> >> no
>> >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
>> >> 'RObject_Impl<PreserveStorage>') for 1st argument
>> >> double get_height(RObject x);
>> >>      ^
>> >> cut_lower.cpp:36:13: error: no matching member function for call to
>> >> 'push_back'
>> >>     lower.push_back(tree);
>> >>     ~~~~~~^~~~~~~~~
>> >>
>> >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:901:7:
>> >> note: candidate function not viable: no known conversion from 'List'
>> >> (aka
>> >> 'Vector<19>') to 'const value_type' (aka 'const
>> >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
>> >>     push_back(const value_type& __x)
>> >>     ^
>> >>
>> >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:919:7:
>> >> note: candidate function not viable: no known conversion from 'List'
>> >> (aka
>> >> 'Vector<19>') to 'value_type' (aka
>> >> 'Rcpp::RObject_Impl<PreserveStorage>')
>> >> for 1st argument
>> >>     push_back(value_type&& __x)
>> >>     ^
>> >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
>> >>  if(is_leaf( tree )) {
>> >>     ^~~~~~~
>> >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
>> >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
>> >> 'RObject_Impl<PreserveStorage>') for 1st argument
>> >> bool is_leaf(RObject x);
>> >>    ^
>> >> 3 errors generated.
>> >> make: *** [cut_lower.o] Error 1
>> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
>> >> -I/usr/local/include
>> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
>> >> -fpic  -g
>> >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
>> >> cut_lower.cpp:35:7: error: no matching function for call to
>> >> 'get_height'
>> >>  if(get_height(tree) <= height) {
>> >>     ^~~~~~~~~~
>> >> ./get_branches_heights.hpp:29:8: note: candidate function not viable:
>> >> no
>> >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
>> >> 'RObject_Impl<PreserveStorage>') for 1st argument
>> >> double get_height(RObject x);
>> >>      ^
>> >> cut_lower.cpp:36:13: error: no matching member function for call to
>> >> 'push_back'
>> >>     lower.push_back(tree);
>> >>     ~~~~~~^~~~~~~~~
>> >>
>> >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:901:7:
>> >> note: candidate function not viable: no known conversion from 'List'
>> >> (aka
>> >> 'Vector<19>') to 'const value_type' (aka 'const
>> >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
>> >>     push_back(const value_type& __x)
>> >>     ^
>> >>
>> >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:919:7:
>> >> note: candidate function not viable: no known conversion from 'List'
>> >> (aka
>> >> 'Vector<19>') to 'value_type' (aka
>> >> 'Rcpp::RObject_Impl<PreserveStorage>')
>> >> for 1st argument
>> >>     push_back(value_type&& __x)
>> >>     ^
>> >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
>> >>  if(is_leaf( tree )) {
>> >>     ^~~~~~~
>> >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
>> >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
>> >> 'RObject_Impl<PreserveStorage>') for 1st argument
>> >> bool is_leaf(RObject x);
>> >>    ^
>> >> 3 errors generated.
>> >> make: *** [cut_lower.o] Error 1
>> >> ERROR: compilation failed for package 'dendextendRcpp'
>> >> * removing '/home/Hornik/tmp/CRAN/dendextendRcpp.Rcheck/dendextendRcpp'
>> >>
>> >>
>> >> _______________________________________________
>> >> Rcpp-devel mailing list
>> >> Rcpp-devel at lists.r-forge.r-project.org
>> >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>> > _______________________________________________
>> > Rcpp-devel mailing list
>> > Rcpp-devel at lists.r-forge.r-project.org
>> > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
>

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