[Rcpp-devel] Fwd: CRAN submission growfunctions 0.1

[terrance savitsky]

Hi Rcpp developers,  I recently added a new package (growfunctions) to
CRAN (http://cran.r-project.org/web/packages/growfunctions/index.html)
that uses Rcpp and RcppArmadillo.  The attached links report a
memory-access error associated to the as<> wrapper for SpMat objects
(that I use in the file 'dpmix.cpp' to wrap dgCMatrix objects of the
Matrix package).  I'd appreciate your input on whether this is a known
issue and whether there is a fix?

http://www.stats.ox.ac.uk/pub/bdr/memtests/ASAN/growfunctions/
http://www.stats.ox.ac.uk/pub/bdr/memtests/valgrind/?C=M;O=D

Thank you for your help and thoughts.

Terrance


---------- Forwarded message ----------
From: Prof Brian Ripley <ripley at stats.ox.ac.uk>
Date: Sat, Aug 9, 2014 at 3:08 AM
Subject: Re: CRAN submission growfunctions 0.1
To: Uwe Ligges <ligges at statistik.tu-dortmund.de>, Terrance Savitsky
<tds151 at gmail.com>, CRAN <cran at r-project.org>


This has memory-access errors, see

http://www.stats.ox.ac.uk/pub/bdr/memtests/ASAN/growfunctions/
http://www.stats.ox.ac.uk/pub/bdr/memtests/valgrind/?C=M;O=D

which will get linked from the CRAN results page in due course.


On 08/08/2014 23:03, Uwe Ligges wrote:
>
> Thanks, on CRAN now.
>
> Best,
> Uwe Ligges
>
> On 08.08.2014 20:57, Terrance Savitsky wrote:
>>
>> [This was generated from CRAN.R-project.org/submit.html]
>>
>> The following package was uploaded to CRAN:
>> ===========================================
>>
>> Package Information:
>> Package: growfunctions
>> Version: 0.1
>> Title: Bayesian non-parametric dependent models for time-indexed
>>    functional data
>> Author(s): Terrance Savitsky
>> Maintainer: Terrance Savitsky <tds151 at gmail.com>
>> Depends: R (>= 3.1.1), Rcpp (>= 0.11.2)
>> Suggests: testthat(>= 0.8.1)
>> Description: Estimates a collection of time-indexed functions under
>> either
>>    of Gaussian process (GP) or intrinsic Gaussian Markov random
>>    field (iGMRF) prior formulations where a Dirichlet process
>>    mixture allows sub-groupings of the functions to share the
>>    same covariance or precision parameters. The GP and iGMRF
>>    formulations both support any number of additive covariance
>>    or precision terms, respectively, expressing either or both
>>    of multiple trend and seasonality.
>> License: GPL (>= 3)
>> Imports: Matrix(>= 1.1), spam(>= 0.41-0), mvtnorm(>= 1.0-0), ggplot2(>=
>>    0.9.3.1), reshape2(>= 1.2.2), scales(>= 0.2.3)
>> LinkingTo: Rcpp (>= 0.11.2), RcppArmadillo (>= 0.4.000)
>>
>>
>> The maintainer confirms that he or she
>> has read and agrees to the CRAN policies.
>>
>> Submitter's comment: I upload growfunctions version 0.1, which is a new
>>    package submission to CRAN.  It successfully checks
>>    for me, without issue, under R-devel --as-cran.  The
>>    examples run in < 5s on my hardware
>>    configuration.
>>
>> Thank you for your work on my
>>    package.
>>
>> Terrance Savitsky
>>    (tds151 at gmail.com)
>> growfunctions package maintainer.
>>
>


--
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
1 South Parks Road, Oxford OX1 3TG, UK


-- 
Thank you, Terrance Savitsky